tophat-2.1.1-x86_64-2_slonly.txz


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Description

tophat - Splice junction mapper for RNA-Seq reads

Property Value
Distribution Slackware 14.2
Repository Slackonly x86_64
Package name tophat
Package version 2.1.1
Package release 2_slonly
Package architecture x86_64
Package type txz
Installed size 4.09 MB
Download size 772.00 KB
Official Mirror packages.slackonly.com
TopHat is a fast splice junction mapper for RNA-Seq reads. It
aligns RNA-Seq reads to mammalian-sized genomes using the ultra
high-throughput short read aligner Bowtie, and then analyzes the
mapping results to identify splice junctions between exons.
Home: http://tophat.cbcb.umd.edu/
References: /usr/doc/tophat-2.1.1/References

Alternatives

Package Version Architecture Repository
tophat-2.1.1-i586-1_slonly.txz 2.1.1 i586 Slackonly
tophat - - -

Download

Type URL
Binary Package tophat-2.1.1-x86_64-2_slonly.txz
Source Package unknown

Install Howto

  1. Download tophat-2.1.1-x86_64-2_slonly.txz
  2. Install tophat txz package:
    # upgradepkg --install-new tophat-2.1.1-x86_64-2_slonly.txz

Files

Path
/install/slack-desc
/usr/
/usr/bin/bam2fastx
/usr/bin/bam_merge
/usr/bin/bed_to_juncs
/usr/bin/contig_to_chr_coords
/usr/bin/fix_map_ordering
/usr/bin/gtf_juncs
/usr/bin/gtf_to_fasta
/usr/bin/juncs_db
/usr/bin/long_spanning_reads
/usr/bin/map2gtf
/usr/bin/prep_reads
/usr/bin/sam_juncs
/usr/bin/samtools_0.1.18
/usr/bin/segment_juncs
/usr/bin/sra_to_solid
/usr/bin/tophat
/usr/bin/tophat-fusion-post
/usr/bin/tophat2
/usr/bin/tophat_reports
/usr/bin/intervaltree/__init__.py
/usr/bin/intervaltree/interval.py
/usr/bin/intervaltree/intervaltree.py
/usr/bin/intervaltree/node.py
/usr/bin/sortedcontainers/__init__.py
/usr/bin/sortedcontainers/sorteddict.py
/usr/bin/sortedcontainers/sortedlist.py
/usr/bin/sortedcontainers/sortedlistwithkey.py
/usr/bin/sortedcontainers/sortedset.py
/usr/doc/
/usr/doc/tophat-2.1.1/AUTHORS
/usr/doc/tophat-2.1.1/INSTALL
/usr/doc/tophat-2.1.1/LICENSE
/usr/doc/tophat-2.1.1/NEWS
/usr/doc/tophat-2.1.1/README
/usr/doc/tophat-2.1.1/References
/usr/doc/tophat-2.1.1/THANKS
/usr/doc/tophat-2.1.1/tophat.SlackBuild

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