pysam-0.14.1-x86_64-1_slonly.txz


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Description

pysam - read/write genomic data sets

Property Value
Distribution Slackware 14.2
Repository Slackonly x86_64
Package filename pysam-0.14.1-x86_64-1_slonly.txz
Package name pysam
Package version 0.14.1
Package release 1_slonly
Package architecture x86_64
Package type txz
Homepage -
License -
Maintainer -
Download size 1.68 MB
Installed size 6.08 MB
Pysam is a python module for reading and manipulating files in the
SAM, BAM, CRAM, VCF, and BCF format used for storing and writing
genomic data sets. Pysam is a lightweight wrapper of the samtools
and htslib C-API's and also includes an interface for tabix.
Home: https://github.com/pysam-developers/pysam
Howto: https://pysam.readthedocs.io/en/latest/

Alternatives

Package Version Architecture Repository
pysam - - -

Download

Type URL
Mirror packages.slackonly.com
Binary Package pysam-0.14.1-x86_64-1_slonly.txz
Source Package -

Install Howto

  1. Download pysam-0.14.1-x86_64-1_slonly.txz
  2. Install pysam txz package:
    # upgradepkg --install-new pysam-0.14.1-x86_64-1_slonly.txz

Files

Path
/install/slack-desc
/usr/
/usr/doc/
/usr/doc/pysam-0.14.1/COPYING
/usr/doc/pysam-0.14.1/INSTALL
/usr/doc/pysam-0.14.1/README.rst
/usr/doc/pysam-0.14.1/pysam.SlackBuild
/usr/lib64/
/usr/lib64/python2.7/
/usr/lib64/python2.7/site-packages/
/usr/lib64/python2.7/site-packages/pysam/Pileup.py
/usr/lib64/python2.7/site-packages/pysam/Pileup.pyc
/usr/lib64/python2.7/site-packages/pysam/__init__.py
/usr/lib64/python2.7/site-packages/pysam/__init__.pyc
/usr/lib64/python2.7/site-packages/pysam/bcftools.py
/usr/lib64/python2.7/site-packages/pysam/bcftools.pyc
/usr/lib64/python2.7/site-packages/pysam/cbcftools_util.h
/usr/lib64/python2.7/site-packages/pysam/config.py
/usr/lib64/python2.7/site-packages/pysam/config.pyc
/usr/lib64/python2.7/site-packages/pysam/csamtools_util.h
/usr/lib64/python2.7/site-packages/pysam/htslib_util.h
/usr/lib64/python2.7/site-packages/pysam/libcalignedsegment.pxd
/usr/lib64/python2.7/site-packages/pysam/libcalignedsegment.so
/usr/lib64/python2.7/site-packages/pysam/libcalignmentfile.pxd
/usr/lib64/python2.7/site-packages/pysam/libcalignmentfile.so
/usr/lib64/python2.7/site-packages/pysam/libcbcf.pxd
/usr/lib64/python2.7/site-packages/pysam/libcbcf.so
/usr/lib64/python2.7/site-packages/pysam/libcbcftools.pxd
/usr/lib64/python2.7/site-packages/pysam/libcbcftools.so
/usr/lib64/python2.7/site-packages/pysam/libcbgzf.so
/usr/lib64/python2.7/site-packages/pysam/libcfaidx.pxd
/usr/lib64/python2.7/site-packages/pysam/libcfaidx.so
/usr/lib64/python2.7/site-packages/pysam/libchtslib.pxd
/usr/lib64/python2.7/site-packages/pysam/libchtslib.so
/usr/lib64/python2.7/site-packages/pysam/libcsamfile.pxd
/usr/lib64/python2.7/site-packages/pysam/libcsamfile.so
/usr/lib64/python2.7/site-packages/pysam/libcsamtools.pxd
/usr/lib64/python2.7/site-packages/pysam/libcsamtools.so
/usr/lib64/python2.7/site-packages/pysam/libctabix.pxd
/usr/lib64/python2.7/site-packages/pysam/libctabix.so
/usr/lib64/python2.7/site-packages/pysam/libctabixproxies.pxd
/usr/lib64/python2.7/site-packages/pysam/libctabixproxies.so
/usr/lib64/python2.7/site-packages/pysam/libcutils.pxd
/usr/lib64/python2.7/site-packages/pysam/libcutils.so
/usr/lib64/python2.7/site-packages/pysam/libcvcf.pxd
/usr/lib64/python2.7/site-packages/pysam/libcvcf.so
/usr/lib64/python2.7/site-packages/pysam/pysam_stream.h
/usr/lib64/python2.7/site-packages/pysam/pysam_util.h
/usr/lib64/python2.7/site-packages/pysam/samtools.py
/usr/lib64/python2.7/site-packages/pysam/samtools.pyc
/usr/lib64/python2.7/site-packages/pysam/utils.py
/usr/lib64/python2.7/site-packages/pysam/utils.pyc
/usr/lib64/python2.7/site-packages/pysam/version.py
/usr/lib64/python2.7/site-packages/pysam/version.pyc
/usr/lib64/python2.7/site-packages/pysam-0.14.1-py2.7.egg-info/PKG-INFO
/usr/lib64/python2.7/site-packages/pysam-0.14.1-py2.7.egg-info/SOURCES.txt
/usr/lib64/python2.7/site-packages/pysam-0.14.1-py2.7.egg-info/dependency_links.txt
/usr/lib64/python2.7/site-packages/pysam-0.14.1-py2.7.egg-info/not-zip-safe
/usr/lib64/python2.7/site-packages/pysam-0.14.1-py2.7.egg-info/top_level.txt
/usr/lib64/python2.7/site-packages/pysam/include/__init__.py
/usr/lib64/python2.7/site-packages/pysam/include/__init__.pyc
/usr/lib64/python2.7/site-packages/pysam/include/bcftools/HMM.h
/usr/lib64/python2.7/site-packages/pysam/include/bcftools/bam2bcf.h
/usr/lib64/python2.7/site-packages/pysam/include/bcftools/bam_sample.h
/usr/lib64/python2.7/site-packages/pysam/include/bcftools/bcftools.h
/usr/lib64/python2.7/site-packages/pysam/include/bcftools/bcftools.pysam.h
/usr/lib64/python2.7/site-packages/pysam/include/bcftools/bin.h
/usr/lib64/python2.7/site-packages/pysam/include/bcftools/call.h
/usr/lib64/python2.7/site-packages/pysam/include/bcftools/config.h
/usr/lib64/python2.7/site-packages/pysam/include/bcftools/convert.h
/usr/lib64/python2.7/site-packages/pysam/include/bcftools/filter.h
/usr/lib64/python2.7/site-packages/pysam/include/bcftools/gvcf.h
/usr/lib64/python2.7/site-packages/pysam/include/bcftools/hclust.h
/usr/lib64/python2.7/site-packages/pysam/include/bcftools/khash_str2str.h
/usr/lib64/python2.7/site-packages/pysam/include/bcftools/kheap.h
/usr/lib64/python2.7/site-packages/pysam/include/bcftools/kmin.h
/usr/lib64/python2.7/site-packages/pysam/include/bcftools/mw.h
/usr/lib64/python2.7/site-packages/pysam/include/bcftools/ploidy.h
/usr/lib64/python2.7/site-packages/pysam/include/bcftools/prob1.h
/usr/lib64/python2.7/site-packages/pysam/include/bcftools/rbuf.h
/usr/lib64/python2.7/site-packages/pysam/include/bcftools/regidx.h
/usr/lib64/python2.7/site-packages/pysam/include/bcftools/smpl_ilist.h
/usr/lib64/python2.7/site-packages/pysam/include/bcftools/tsv2vcf.h
/usr/lib64/python2.7/site-packages/pysam/include/bcftools/vcfbuf.h
/usr/lib64/python2.7/site-packages/pysam/include/bcftools/vcmp.h
/usr/lib64/python2.7/site-packages/pysam/include/bcftools/version.h
/usr/lib64/python2.7/site-packages/pysam/include/htslib/bcf_sr_sort.h
/usr/lib64/python2.7/site-packages/pysam/include/htslib/config.h
/usr/lib64/python2.7/site-packages/pysam/include/htslib/hfile_internal.h
/usr/lib64/python2.7/site-packages/pysam/include/htslib/hts_internal.h
/usr/lib64/python2.7/site-packages/pysam/include/htslib/textutils_internal.h
/usr/lib64/python2.7/site-packages/pysam/include/htslib/thread_pool_internal.h
/usr/lib64/python2.7/site-packages/pysam/include/htslib/version.h
/usr/lib64/python2.7/site-packages/pysam/include/htslib/htslib/bgzf.h
/usr/lib64/python2.7/site-packages/pysam/include/htslib/htslib/cram.h
/usr/lib64/python2.7/site-packages/pysam/include/htslib/htslib/faidx.h
/usr/lib64/python2.7/site-packages/pysam/include/htslib/htslib/hfile.h
/usr/lib64/python2.7/site-packages/pysam/include/htslib/htslib/hts.h
/usr/lib64/python2.7/site-packages/pysam/include/htslib/htslib/hts_defs.h
/usr/lib64/python2.7/site-packages/pysam/include/htslib/htslib/hts_endian.h
/usr/lib64/python2.7/site-packages/pysam/include/htslib/htslib/hts_log.h
/usr/lib64/python2.7/site-packages/pysam/include/htslib/htslib/hts_os.h
/usr/lib64/python2.7/site-packages/pysam/include/htslib/htslib/kbitset.h
/usr/lib64/python2.7/site-packages/pysam/include/htslib/htslib/kfunc.h
/usr/lib64/python2.7/site-packages/pysam/include/htslib/htslib/khash.h
/usr/lib64/python2.7/site-packages/pysam/include/htslib/htslib/khash_str2int.h
/usr/lib64/python2.7/site-packages/pysam/include/htslib/htslib/klist.h
/usr/lib64/python2.7/site-packages/pysam/include/htslib/htslib/knetfile.h
/usr/lib64/python2.7/site-packages/pysam/include/htslib/htslib/kseq.h
/usr/lib64/python2.7/site-packages/pysam/include/htslib/htslib/ksort.h
/usr/lib64/python2.7/site-packages/pysam/include/htslib/htslib/kstring.h
/usr/lib64/python2.7/site-packages/pysam/include/htslib/htslib/regidx.h
/usr/lib64/python2.7/site-packages/pysam/include/htslib/htslib/sam.h
/usr/lib64/python2.7/site-packages/pysam/include/htslib/htslib/synced_bcf_reader.h
/usr/lib64/python2.7/site-packages/pysam/include/htslib/htslib/tbx.h
/usr/lib64/python2.7/site-packages/pysam/include/htslib/htslib/thread_pool.h
/usr/lib64/python2.7/site-packages/pysam/include/htslib/htslib/vcf.h
/usr/lib64/python2.7/site-packages/pysam/include/htslib/htslib/vcf_sweep.h
/usr/lib64/python2.7/site-packages/pysam/include/htslib/htslib/vcfutils.h
/usr/lib64/python2.7/site-packages/pysam/include/samtools/bam.h
/usr/lib64/python2.7/site-packages/pysam/include/samtools/bam2bcf.h
/usr/lib64/python2.7/site-packages/pysam/include/samtools/bam_endian.h
/usr/lib64/python2.7/site-packages/pysam/include/samtools/bam_lpileup.h
/usr/lib64/python2.7/site-packages/pysam/include/samtools/bam_plbuf.h
/usr/lib64/python2.7/site-packages/pysam/include/samtools/bedidx.h
/usr/lib64/python2.7/site-packages/pysam/include/samtools/config.h
/usr/lib64/python2.7/site-packages/pysam/include/samtools/sam.h
/usr/lib64/python2.7/site-packages/pysam/include/samtools/sam_header.h
/usr/lib64/python2.7/site-packages/pysam/include/samtools/sam_opts.h
/usr/lib64/python2.7/site-packages/pysam/include/samtools/sample.h
/usr/lib64/python2.7/site-packages/pysam/include/samtools/samtools.h
/usr/lib64/python2.7/site-packages/pysam/include/samtools/samtools.pysam.h
/usr/lib64/python2.7/site-packages/pysam/include/samtools/stats_isize.h
/usr/lib64/python2.7/site-packages/pysam/include/samtools/tmp_file.h
/usr/lib64/python2.7/site-packages/pysam/include/samtools/version.h
/usr/lib64/python2.7/site-packages/pysam/include/samtools/win32/xcurses.h
/usr/lib64/python2.7/site-packages/pysam/include/samtools/win32/zconf.h
/usr/lib64/python2.7/site-packages/pysam/include/samtools/win32/zlib.h

See Also

Package Description
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