RepeatMasker-4.0.7-noarch-1_slonly.txz


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Description

RepeatMasker - Screen DNA sequence for interspersed repeats

Property Value
Distribution Slackware 14.2
Repository Slackonly x86_64
Package filename RepeatMasker-4.0.7-noarch-1_slonly.txz
Package name RepeatMasker
Package version 4.0.7
Package release 1_slonly
Package architecture noarch
Package type txz
Homepage -
License -
Maintainer -
Download size 186.33 MB
Installed size 1.52 GB
RepeatMasker is a program that screens DNA sequences for inter-
spersed repeats and low complexity DNA sequences. The output of
the program is a detailed annotation of the repeats that are
present in the query sequence as well as a modified version of
the query sequence in which all the annotated repeats have been
masked (default: replaced by Ns).
Home: http://www.repeatmasker.org/

Alternatives

Package Version Architecture Repository
RepeatMasker - - -

Requires

Name Value
HMMER -
ncbi-rmblastn -
perl-Text-Soundex -
trfind -

Download

Type URL
Mirror packages.slackonly.com
Binary Package RepeatMasker-4.0.7-noarch-1_slonly.txz
Source Package -

Install Howto

  1. Download RepeatMasker-4.0.7-noarch-1_slonly.txz
  2. Install RepeatMasker txz package:
    # upgradepkg --install-new RepeatMasker-4.0.7-noarch-1_slonly.txz

Files

Path
/install/doinst.sh
/install/slack-desc
/install/slack-required
/opt/
/opt/RepeatMasker/ArrayList.pm
/opt/RepeatMasker/ArrayListIterator.pm
/opt/RepeatMasker/CrossmatchSearchEngine.pm
/opt/RepeatMasker/DFAM.pm
/opt/RepeatMasker/DFAMRecord.pm
/opt/RepeatMasker/DateRepeats
/opt/RepeatMasker/DeCypherSearchEngine.pm
/opt/RepeatMasker/DupMasker
/opt/RepeatMasker/FastaDB.pm
/opt/RepeatMasker/HMMERSearchEngine.pm
/opt/RepeatMasker/HTMLAnnotHeader.html
/opt/RepeatMasker/INSTALL
/opt/RepeatMasker/LibraryUtils.pm
/opt/RepeatMasker/Matrix.pm
/opt/RepeatMasker/NCBIBlastSearchEngine.pm
/opt/RepeatMasker/NCBIBlastXSearchEngine.pm
/opt/RepeatMasker/PRSearchResult.pm
/opt/RepeatMasker/ProcessRepeats
/opt/RepeatMasker/PubRef.pm
/opt/RepeatMasker/README
/opt/RepeatMasker/RepbaseEMBL.pm
/opt/RepeatMasker/RepbaseRecord.pm
/opt/RepeatMasker/RepeatMasker
/opt/RepeatMasker/RepeatMaskerConfig.tmpl
/opt/RepeatMasker/RepeatProteinMask
/opt/RepeatMasker/RepeatRecord.pm
/opt/RepeatMasker/RmEMBL.pm
/opt/RepeatMasker/SearchEngineI.pm
/opt/RepeatMasker/SearchResult.pm
/opt/RepeatMasker/SearchResultCollection.pm
/opt/RepeatMasker/SeqDBI.pm
/opt/RepeatMasker/SimpleBatcher.pm
/opt/RepeatMasker/TRF.pm
/opt/RepeatMasker/TRFResult.pm
/opt/RepeatMasker/TRFSearchResult.pm
/opt/RepeatMasker/Taxonomy.pm
/opt/RepeatMasker/WUBlastSearchEngine.pm
/opt/RepeatMasker/WUBlastXSearchEngine.pm
/opt/RepeatMasker/bluegrad.jpg
/opt/RepeatMasker/configure
/opt/RepeatMasker/daterepeats.help
/opt/RepeatMasker/license.txt
/opt/RepeatMasker/repeatmasker.help
/opt/RepeatMasker/Libraries/Dfam.hmm
/opt/RepeatMasker/Libraries/DfamConsensus.embl
/opt/RepeatMasker/Libraries/README.meta
/opt/RepeatMasker/Libraries/RMRBMeta.embl
/opt/RepeatMasker/Libraries/RepeatAnnotationData.pm
/opt/RepeatMasker/Libraries/RepeatPeps.lib
/opt/RepeatMasker/Libraries/RepeatPeps.readme
/opt/RepeatMasker/Libraries/taxonomy.dat
/opt/RepeatMasker/Matrices/
/opt/RepeatMasker/Matrices/crossmatch/14p35g.matrix
/opt/RepeatMasker/Matrices/crossmatch/14p37g.matrix
/opt/RepeatMasker/Matrices/crossmatch/14p39g.matrix
/opt/RepeatMasker/Matrices/crossmatch/14p41g.matrix
/opt/RepeatMasker/Matrices/crossmatch/14p43g.matrix
/opt/RepeatMasker/Matrices/crossmatch/14p45g.matrix
/opt/RepeatMasker/Matrices/crossmatch/14p47g.matrix
/opt/RepeatMasker/Matrices/crossmatch/14p49g.matrix
/opt/RepeatMasker/Matrices/crossmatch/14p51g.matrix
/opt/RepeatMasker/Matrices/crossmatch/14p53g.matrix
/opt/RepeatMasker/Matrices/crossmatch/18p35g.matrix
/opt/RepeatMasker/Matrices/crossmatch/18p37g.matrix
/opt/RepeatMasker/Matrices/crossmatch/18p39g.matrix
/opt/RepeatMasker/Matrices/crossmatch/18p41g.matrix
/opt/RepeatMasker/Matrices/crossmatch/18p43g.matrix
/opt/RepeatMasker/Matrices/crossmatch/18p45g.matrix
/opt/RepeatMasker/Matrices/crossmatch/18p47g.matrix
/opt/RepeatMasker/Matrices/crossmatch/18p49g.matrix
/opt/RepeatMasker/Matrices/crossmatch/18p51g.matrix
/opt/RepeatMasker/Matrices/crossmatch/18p53g.matrix
/opt/RepeatMasker/Matrices/crossmatch/20p35g.matrix
/opt/RepeatMasker/Matrices/crossmatch/20p37g.matrix
/opt/RepeatMasker/Matrices/crossmatch/20p39g.matrix
/opt/RepeatMasker/Matrices/crossmatch/20p41g.matrix
/opt/RepeatMasker/Matrices/crossmatch/20p43g.matrix
/opt/RepeatMasker/Matrices/crossmatch/20p45g.matrix
/opt/RepeatMasker/Matrices/crossmatch/20p47g.matrix
/opt/RepeatMasker/Matrices/crossmatch/20p49g.matrix
/opt/RepeatMasker/Matrices/crossmatch/20p51g.matrix
/opt/RepeatMasker/Matrices/crossmatch/20p53g.matrix
/opt/RepeatMasker/Matrices/crossmatch/25p35g.matrix
/opt/RepeatMasker/Matrices/crossmatch/25p37g.matrix
/opt/RepeatMasker/Matrices/crossmatch/25p39g.matrix
/opt/RepeatMasker/Matrices/crossmatch/25p41g.matrix
/opt/RepeatMasker/Matrices/crossmatch/25p43g.matrix
/opt/RepeatMasker/Matrices/crossmatch/25p45g.matrix
/opt/RepeatMasker/Matrices/crossmatch/25p47g.matrix
/opt/RepeatMasker/Matrices/crossmatch/25p49g.matrix
/opt/RepeatMasker/Matrices/crossmatch/25p51g.matrix
/opt/RepeatMasker/Matrices/crossmatch/25p53g.matrix
/opt/RepeatMasker/Matrices/crossmatch/30p53g.matrix
/opt/RepeatMasker/Matrices/crossmatch/at.matrix
/opt/RepeatMasker/Matrices/crossmatch/identity.matrix
/opt/RepeatMasker/Matrices/crossmatch/simple.matrix
/opt/RepeatMasker/Matrices/crossmatch/simple1.matrix
/opt/RepeatMasker/Matrices/crossmatch/transp.matrix
/opt/RepeatMasker/Matrices/ncbi/
/opt/RepeatMasker/Matrices/ncbi/nt/14p35g.matrix
/opt/RepeatMasker/Matrices/ncbi/nt/14p37g.matrix
/opt/RepeatMasker/Matrices/ncbi/nt/14p39g.matrix
/opt/RepeatMasker/Matrices/ncbi/nt/14p41g.matrix
/opt/RepeatMasker/Matrices/ncbi/nt/14p43g.matrix
/opt/RepeatMasker/Matrices/ncbi/nt/14p45g.matrix
/opt/RepeatMasker/Matrices/ncbi/nt/14p47g.matrix
/opt/RepeatMasker/Matrices/ncbi/nt/14p49g.matrix
/opt/RepeatMasker/Matrices/ncbi/nt/14p51g.matrix
/opt/RepeatMasker/Matrices/ncbi/nt/14p53g.matrix
/opt/RepeatMasker/Matrices/ncbi/nt/18p35g.matrix
/opt/RepeatMasker/Matrices/ncbi/nt/18p37g.matrix
/opt/RepeatMasker/Matrices/ncbi/nt/18p39g.matrix
/opt/RepeatMasker/Matrices/ncbi/nt/18p41g.matrix
/opt/RepeatMasker/Matrices/ncbi/nt/18p43g.matrix
/opt/RepeatMasker/Matrices/ncbi/nt/18p45g.matrix
/opt/RepeatMasker/Matrices/ncbi/nt/18p47g.matrix
/opt/RepeatMasker/Matrices/ncbi/nt/18p49g.matrix
/opt/RepeatMasker/Matrices/ncbi/nt/18p51g.matrix
/opt/RepeatMasker/Matrices/ncbi/nt/18p53g.matrix
/opt/RepeatMasker/Matrices/ncbi/nt/20p35g.matrix
/opt/RepeatMasker/Matrices/ncbi/nt/20p37g.matrix
/opt/RepeatMasker/Matrices/ncbi/nt/20p39g.matrix
/opt/RepeatMasker/Matrices/ncbi/nt/20p41g.matrix
/opt/RepeatMasker/Matrices/ncbi/nt/20p43g.matrix
/opt/RepeatMasker/Matrices/ncbi/nt/20p45g.matrix
/opt/RepeatMasker/Matrices/ncbi/nt/20p47g.matrix
/opt/RepeatMasker/Matrices/ncbi/nt/20p49g.matrix
/opt/RepeatMasker/Matrices/ncbi/nt/20p51g.matrix
/opt/RepeatMasker/Matrices/ncbi/nt/20p53g.matrix
/opt/RepeatMasker/Matrices/ncbi/nt/25p35g.matrix
/opt/RepeatMasker/Matrices/ncbi/nt/25p37g.matrix
/opt/RepeatMasker/Matrices/ncbi/nt/25p39g.matrix
/opt/RepeatMasker/Matrices/ncbi/nt/25p41g.matrix
/opt/RepeatMasker/Matrices/ncbi/nt/25p43g.matrix
/opt/RepeatMasker/Matrices/ncbi/nt/25p45g.matrix
/opt/RepeatMasker/Matrices/ncbi/nt/25p47g.matrix
/opt/RepeatMasker/Matrices/ncbi/nt/25p49g.matrix
/opt/RepeatMasker/Matrices/ncbi/nt/25p51g.matrix
/opt/RepeatMasker/Matrices/ncbi/nt/25p53g.matrix
/opt/RepeatMasker/Matrices/ncbi/nt/30p53g.matrix
/opt/RepeatMasker/Matrices/ncbi/nt/at.matrix
/opt/RepeatMasker/Matrices/ncbi/nt/atx.matrix
/opt/RepeatMasker/Matrices/ncbi/nt/identity.matrix
/opt/RepeatMasker/Matrices/ncbi/nt/ncbiblastdefault.matrix
/opt/RepeatMasker/Matrices/ncbi/nt/simple.matrix
/opt/RepeatMasker/Matrices/ncbi/nt/simple1.matrix
/opt/RepeatMasker/Matrices/ncbi/nt/simplex.matrix
/opt/RepeatMasker/Matrices/ncbi/nt/wublastdefault.matrix
/opt/RepeatMasker/Matrices/wublast/
/opt/RepeatMasker/Matrices/wublast/aa/14p35g.matrix
/opt/RepeatMasker/Matrices/wublast/aa/14p37g.matrix
/opt/RepeatMasker/Matrices/wublast/aa/14p39g.matrix
/opt/RepeatMasker/Matrices/wublast/aa/14p41g.matrix
/opt/RepeatMasker/Matrices/wublast/aa/14p43g.matrix
/opt/RepeatMasker/Matrices/wublast/aa/14p45g.matrix
/opt/RepeatMasker/Matrices/wublast/aa/14p47g.matrix
/opt/RepeatMasker/Matrices/wublast/aa/14p49g.matrix
/opt/RepeatMasker/Matrices/wublast/aa/14p51g.matrix
/opt/RepeatMasker/Matrices/wublast/aa/14p53g.matrix
/opt/RepeatMasker/Matrices/wublast/aa/18p35g.matrix
/opt/RepeatMasker/Matrices/wublast/aa/18p37g.matrix
/opt/RepeatMasker/Matrices/wublast/aa/18p39g.matrix
/opt/RepeatMasker/Matrices/wublast/aa/18p41g.matrix
/opt/RepeatMasker/Matrices/wublast/aa/18p43g.matrix
/opt/RepeatMasker/Matrices/wublast/aa/18p45g.matrix
/opt/RepeatMasker/Matrices/wublast/aa/18p47g.matrix
/opt/RepeatMasker/Matrices/wublast/aa/18p49g.matrix
/opt/RepeatMasker/Matrices/wublast/aa/18p51g.matrix
/opt/RepeatMasker/Matrices/wublast/aa/18p53g.matrix
/opt/RepeatMasker/Matrices/wublast/aa/20p35g.matrix
/opt/RepeatMasker/Matrices/wublast/aa/20p37g.matrix
/opt/RepeatMasker/Matrices/wublast/aa/20p39g.matrix
/opt/RepeatMasker/Matrices/wublast/aa/20p41g.matrix
/opt/RepeatMasker/Matrices/wublast/aa/20p43g.matrix
/opt/RepeatMasker/Matrices/wublast/aa/20p45g.matrix
/opt/RepeatMasker/Matrices/wublast/aa/20p47g.matrix
/opt/RepeatMasker/Matrices/wublast/aa/20p49g.matrix
/opt/RepeatMasker/Matrices/wublast/aa/20p51g.matrix
/opt/RepeatMasker/Matrices/wublast/aa/20p53g.matrix
/opt/RepeatMasker/Matrices/wublast/aa/25p35g.matrix
/opt/RepeatMasker/Matrices/wublast/aa/25p37g.matrix
/opt/RepeatMasker/Matrices/wublast/aa/25p39g.matrix
/opt/RepeatMasker/Matrices/wublast/aa/25p41g.matrix
/opt/RepeatMasker/Matrices/wublast/aa/25p43g.matrix
/opt/RepeatMasker/Matrices/wublast/aa/25p45g.matrix
/opt/RepeatMasker/Matrices/wublast/aa/25p47g.matrix
/opt/RepeatMasker/Matrices/wublast/aa/25p49g.matrix
/opt/RepeatMasker/Matrices/wublast/aa/25p51g.matrix
/opt/RepeatMasker/Matrices/wublast/aa/25p53g.matrix
/opt/RepeatMasker/Matrices/wublast/aa/30p53g.matrix
/opt/RepeatMasker/Matrices/wublast/aa/at.matrix
/opt/RepeatMasker/Matrices/wublast/aa/identity.matrix
/opt/RepeatMasker/Matrices/wublast/aa/simple.matrix
/opt/RepeatMasker/Matrices/wublast/aa/simple1.matrix
/opt/RepeatMasker/Matrices/wublast/nt/14p35g.matrix
/opt/RepeatMasker/Matrices/wublast/nt/14p35g.matrix.4.2
/opt/RepeatMasker/Matrices/wublast/nt/14p35g.matrix.4.4
/opt/RepeatMasker/Matrices/wublast/nt/20p41g.matrix
/opt/RepeatMasker/Matrices/wublast/nt/20p41g.matrix.4.2
/opt/RepeatMasker/Matrices/wublast/nt/20p41g.matrix.4.4
/opt/RepeatMasker/util/buildRMLibFromEMBL.pl
/opt/RepeatMasker/util/buildSummary.pl
/opt/RepeatMasker/util/calcDivergenceFromAlign.pl
/opt/RepeatMasker/util/createRepeatLandscape.pl
/opt/RepeatMasker/util/dupliconToSVG.pl
/opt/RepeatMasker/util/getRepeatMaskerBatch.pl
/opt/RepeatMasker/util/queryRepeatDatabase.pl
/opt/RepeatMasker/util/queryTaxonomyDatabase.pl
/opt/RepeatMasker/util/rmOut2Fasta.pl
/opt/RepeatMasker/util/rmOutToGFF3.pl
/opt/RepeatMasker/util/rmToUCSCTables.pl
/opt/RepeatMasker/util/trfMask
/opt/RepeatMasker/util/wublastToCrossmatch.pl
/usr/
/usr/bin/
/usr/doc/
/usr/doc/RepeatMasker-4.0.7/INSTALL
/usr/doc/RepeatMasker-4.0.7/README
/usr/doc/RepeatMasker-4.0.7/README.SLACKWARE
/usr/doc/RepeatMasker-4.0.7/References
/usr/doc/RepeatMasker-4.0.7/RepeatMasker.SlackBuild
/usr/doc/RepeatMasker-4.0.7/daterepeats.help
/usr/doc/RepeatMasker-4.0.7/license.txt
/usr/doc/RepeatMasker-4.0.7/repeatmasker.help

See Also

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SDL2_gfx-1.0.4-x86_64-1_slonly.txz addon library for the SDL2
SDL2_image-2.0.3-x86_64-2_slonly.txz image loading library
SDL2_mixer-2.0.2-x86_64-2_slonly.txz sample multi-channel audio mixer library
SDL2_net-2.0.1-x86_64-1_slonly.txz cross platform networking library
SDL2_ttf-2.0.14-x86_64-1_slonly.txz SDL2 truetype font library
SDL_Pango-0.1.2-x86_64-3_slonly.txz Pango bindings for SDL
SDL_gfx-2.0.25-x86_64-1_slonly.txz SDL graphics drawing library
SDL_kitchensink-0.0.7-x86_64-1_slonly.txz SDL2 library for audio and video
SDL_sound-1.0.3-x86_64-1_slonly.txz a sound library add-on for SDL
SDRPlay-2.10.2-x86_64-1_slonly.txz API/Driver for SDR Play SDR
SFCGAL-1.3.5-x86_64-1_slonly.txz C++ wrapper around CGAL
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