vcftools-0.1.14_33_g1d27c24-i586-1_slonly.txz


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Description

vcftools - A program package designed for working with VCF files

Distribution: Slackware 14.2
Repository: Slackonly i486
Package name: vcftools
Package version: 0.1.14_33_g1d27c24
Package release: 1_slonly
Package architecture: i586
Package type: txz
Installed size: 1.46 MB
Download size: 400.00 KB
Official Mirror: packages.slackonly.com
VCFtools is a program package designed for working with VCF files such as those generated by the 1000 Genomes Project. The aim of VCFtools is to provide methods for working with VCF files: validating, merging, comparing and calculate some basic population genetic statistics. Home: http://vcftools.sourceforge.net/ References: /usr/doc/vcftools-0.1.14_33_g1d27c24/References

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Requires

    Download

    Source package: unknown

    Install Howto

    1. Download vcftools-0.1.14_33_g1d27c24-i586-1_slonly.txz
    2. Install vcftools txz package:
      # upgradepkg --install-new vcftools-0.1.14_33_g1d27c24-i586-1_slonly.txz

    Files

    • /install/slack-desc
    • /install/slack-required
    • /usr/
    • /usr/bin/fill-aa
    • /usr/bin/fill-an-ac
    • /usr/bin/fill-fs
    • /usr/bin/fill-ref-md5
    • /usr/bin/vcf-annotate
    • /usr/bin/vcf-compare
    • /usr/bin/vcf-concat
    • /usr/bin/vcf-consensus
    • /usr/bin/vcf-contrast
    • /usr/bin/vcf-convert
    • /usr/bin/vcf-fix-newlines
    • /usr/bin/vcf-fix-ploidy
    • /usr/bin/vcf-indel-stats
    • /usr/bin/vcf-isec
    • /usr/bin/vcf-merge
    • /usr/bin/vcf-phased-join
    • /usr/bin/vcf-query
    • /usr/bin/vcf-shuffle-cols
    • /usr/bin/vcf-sort
    • /usr/bin/vcf-stats
    • /usr/bin/vcf-subset
    • /usr/bin/vcf-to-tab
    • /usr/bin/vcf-tstv
    • /usr/bin/vcf-validator
    • /usr/bin/vcftools
    • /usr/doc/
    • /usr/doc/vcftools-0.1.14_33_g1d27c24/ChangeLog
    • /usr/doc/vcftools-0.1.14_33_g1d27c24/README.md
    • /usr/doc/vcftools-0.1.14_33_g1d27c24/References
    • /usr/doc/vcftools-0.1.14_33_g1d27c24/vcftools.SlackBuild
    • /usr/man/
    • /usr/man/man1/vcftools.1.gz
    • /usr/share/
    • /usr/share/perl5/
    • /usr/share/perl5/vendor_perl/FaSlice.pm
    • /usr/share/perl5/vendor_perl/Vcf.pm
    • /usr/share/perl5/vendor_perl/VcfStats.pm
    • /usr/share/vcftools/
    • /usr/share/vcftools/examples/annotate-test.vcf
    • /usr/share/vcftools/examples/annotate.out
    • /usr/share/vcftools/examples/annotate.txt
    • /usr/share/vcftools/examples/annotate2.out
    • /usr/share/vcftools/examples/annotate3.out
    • /usr/share/vcftools/examples/cmp-test-a-3.3.vcf
    • /usr/share/vcftools/examples/cmp-test-a.vcf
    • /usr/share/vcftools/examples/cmp-test-b-3.3.vcf
    • /usr/share/vcftools/examples/cmp-test-b.vcf
    • /usr/share/vcftools/examples/cmp-test.out
    • /usr/share/vcftools/examples/concat-a.vcf
    • /usr/share/vcftools/examples/concat-b.vcf
    • /usr/share/vcftools/examples/concat-c.vcf
    • /usr/share/vcftools/examples/concat.out
    • /usr/share/vcftools/examples/consensus.fa
    • /usr/share/vcftools/examples/consensus.out
    • /usr/share/vcftools/examples/consensus.out2
    • /usr/share/vcftools/examples/consensus.vcf
    • /usr/share/vcftools/examples/contrast.out
    • /usr/share/vcftools/examples/contrast.vcf
    • /usr/share/vcftools/examples/fill-an-ac.out
    • /usr/share/vcftools/examples/filters.txt
    • /usr/share/vcftools/examples/fix-ploidy.out
    • /usr/share/vcftools/examples/fix-ploidy.samples
    • /usr/share/vcftools/examples/fix-ploidy.txt
    • /usr/share/vcftools/examples/fix-ploidy.vcf
    • /usr/share/vcftools/examples/floats.vcf
    • /usr/share/vcftools/examples/indel-stats.out
    • /usr/share/vcftools/examples/indel-stats.tab
    • /usr/share/vcftools/examples/indel-stats.vcf
    • /usr/share/vcftools/examples/invalid-4.0.vcf
    • /usr/share/vcftools/examples/isec-n2-test.vcf.out
    • /usr/share/vcftools/examples/merge-test-a.vcf
    • /usr/share/vcftools/examples/merge-test-b.vcf
    • /usr/share/vcftools/examples/merge-test-c.vcf
    • /usr/share/vcftools/examples/merge-test.vcf.out
    • /usr/share/vcftools/examples/parse-test.vcf
    • /usr/share/vcftools/examples/perl-api-1.pl
    • /usr/share/vcftools/examples/query-test.out
    • /usr/share/vcftools/examples/shuffle-test.vcf
    • /usr/share/vcftools/examples/subset.SNPs.out
    • /usr/share/vcftools/examples/subset.indels.out
    • /usr/share/vcftools/examples/subset.vcf
    • /usr/share/vcftools/examples/valid-3.3.vcf
    • /usr/share/vcftools/examples/valid-4.0.vcf
    • /usr/share/vcftools/examples/valid-4.0.vcf.stats
    • /usr/share/vcftools/examples/valid-4.1.vcf
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