tophat-2.1.1-i586-1_slonly.txz


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Description

tophat - Splice junction mapper for RNA-Seq reads

Distribution: Slackware 14.2
Repository: Slackonly i486
Package name: tophat
Package version: 2.1.1
Package release: 1_slonly
Package architecture: i586
Package type: txz
Installed size: 4.09 MB
Download size: 784.00 KB
Official Mirror: packages.slackonly.com
TopHat is a fast splice junction mapper for RNA-Seq reads. It aligns RNA-Seq reads to mammalian-sized genomes using the ultra high-throughput short read aligner Bowtie, and then analyzes the mapping results to identify splice junctions between exons. Home: http://tophat.cbcb.umd.edu/ References: /usr/doc/tophat-2.1.1/References

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    Download

    Source package: unknown

    Install Howto

    1. Download tophat-2.1.1-i586-1_slonly.txz
    2. Install tophat txz package:
      # upgradepkg --install-new tophat-2.1.1-i586-1_slonly.txz

    Files

    • /install/slack-desc
    • /usr/
    • /usr/bin/bam2fastx
    • /usr/bin/bam_merge
    • /usr/bin/bed_to_juncs
    • /usr/bin/contig_to_chr_coords
    • /usr/bin/fix_map_ordering
    • /usr/bin/gtf_juncs
    • /usr/bin/gtf_to_fasta
    • /usr/bin/juncs_db
    • /usr/bin/long_spanning_reads
    • /usr/bin/map2gtf
    • /usr/bin/prep_reads
    • /usr/bin/sam_juncs
    • /usr/bin/samtools_0.1.18
    • /usr/bin/segment_juncs
    • /usr/bin/sra_to_solid
    • /usr/bin/tophat
    • /usr/bin/tophat-fusion-post
    • /usr/bin/tophat2
    • /usr/bin/tophat_reports
    • /usr/bin/intervaltree/__init__.py
    • /usr/bin/intervaltree/interval.py
    • /usr/bin/intervaltree/intervaltree.py
    • /usr/bin/intervaltree/node.py
    • /usr/bin/sortedcontainers/__init__.py
    • /usr/bin/sortedcontainers/sorteddict.py
    • /usr/bin/sortedcontainers/sortedlist.py
    • /usr/bin/sortedcontainers/sortedlistwithkey.py
    • /usr/bin/sortedcontainers/sortedset.py
    • /usr/doc/
    • /usr/doc/tophat-2.1.1/AUTHORS
    • /usr/doc/tophat-2.1.1/INSTALL
    • /usr/doc/tophat-2.1.1/LICENSE
    • /usr/doc/tophat-2.1.1/NEWS
    • /usr/doc/tophat-2.1.1/README
    • /usr/doc/tophat-2.1.1/References
    • /usr/doc/tophat-2.1.1/THANKS
    • /usr/doc/tophat-2.1.1/tophat.SlackBuild
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