snpEff-4.3k-noarch-1_slonly.txz


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Description

snpEff - Genetic variant annotation and effect prediction toolbox

Property Value
Distribution Slackware 14.2
Repository Slackonly i486
Package name snpEff
Package version 4.3k
Package release 1_slonly
Package architecture noarch
Package type txz
Installed size 130.21 MB
Download size 42.23 MB
Official Mirror packages.slackonly.com
SnpEff is a variant annotation and effect prediction tool. It
annotates and predicts the effects of variants on genes (such
as amino acid changes).
Home: http://snpeff.sourceforge.net/
References: /usr/doc/snpEff-4.3k/References

Alternatives

Package Version Architecture Repository
snpEff-4.3t-noarch-1_slonly.txz 4.3t noarch Slackonly
snpEff - - -

Requires

Name Value
jdk -

Download

Type URL
Binary Package snpEff-4.3k-noarch-1_slonly.txz
Source Package unknown

Install Howto

  1. Download snpEff-4.3k-noarch-1_slonly.txz
  2. Install snpEff txz package:
    # upgradepkg --install-new snpEff-4.3k-noarch-1_slonly.txz

Files

Path
/install/doinst.sh
/install/slack-desc
/install/slack-required
/usr/
/usr/bin/
/usr/doc/
/usr/doc/snpEff-4.3k/References
/usr/doc/snpEff-4.3k/snpEff.SlackBuild
/usr/share/
/usr/share/java/
/usr/share/java/snpEff/SnpSift.jar
/usr/share/java/snpEff/snpEff.config
/usr/share/java/snpEff/snpEff.jar
/usr/share/java/snpEff/examples/1kg.head_chr1.filtered.vcf.gz
/usr/share/java/snpEff/examples/1kg.head_chr1.vcf.gz
/usr/share/java/snpEff/examples/cancer.ann.vcf
/usr/share/java/snpEff/examples/cancer.eff.vcf
/usr/share/java/snpEff/examples/cancer.vcf
/usr/share/java/snpEff/examples/cancer_pedigree.ann.vcf
/usr/share/java/snpEff/examples/cancer_pedigree.vcf
/usr/share/java/snpEff/examples/example_motif.vcf
/usr/share/java/snpEff/examples/examples.sh
/usr/share/java/snpEff/examples/file.vcf
/usr/share/java/snpEff/examples/intervals.bed
/usr/share/java/snpEff/examples/my_annotations.bed
/usr/share/java/snpEff/examples/samples_cancer.txt
/usr/share/java/snpEff/examples/samples_cancer_one.txt
/usr/share/java/snpEff/examples/test.1KG.ann_encode.vcf
/usr/share/java/snpEff/examples/test.1KG.ann_reg.vcf
/usr/share/java/snpEff/examples/test.1KG.vcf
/usr/share/java/snpEff/examples/test.ann.vcf
/usr/share/java/snpEff/examples/test.chr22.ann.filter_missense.vcf
/usr/share/java/snpEff/examples/test.chr22.ann.filter_missense_any.vcf
/usr/share/java/snpEff/examples/test.chr22.ann.filter_missense_any_TRMT2A.vcf
/usr/share/java/snpEff/examples/test.chr22.ann.filter_missense_first.vcf
/usr/share/java/snpEff/examples/test.chr22.ann.one_per_line.txt
/usr/share/java/snpEff/examples/test.chr22.ann.txt
/usr/share/java/snpEff/examples/test.chr22.ann.vcf
/usr/share/java/snpEff/examples/test.chr22.vcf
/usr/share/java/snpEff/examples/test.vcf
/usr/share/java/snpEff/examples/variants_1.ann.vcf
/usr/share/java/snpEff/examples/variants_1.vcf
/usr/share/java/snpEff/examples/variants_2.ann.vcf
/usr/share/java/snpEff/examples/variants_2.vcf
/usr/share/java/snpEff/galaxy/snpEff.xml
/usr/share/java/snpEff/galaxy/snpEffWrapper.pl
/usr/share/java/snpEff/galaxy/snpEff_download.xml
/usr/share/java/snpEff/galaxy/snpSiftWrapper.pl
/usr/share/java/snpEff/galaxy/snpSift_annotate.xml
/usr/share/java/snpEff/galaxy/snpSift_caseControl.xml
/usr/share/java/snpEff/galaxy/snpSift_filter.xml
/usr/share/java/snpEff/galaxy/snpSift_int.xml
/usr/share/java/snpEff/galaxy/tool_conf.xml
/usr/share/java/snpEff/galaxy/tool_dependencies.xml
/usr/share/java/snpEff/galaxy/tool-data/snpEff_genomes.loc
/usr/share/java/snpEff/galaxy/tool-data/snpEff_genomes.loc.sample
/usr/share/java/snpEff/scripts/1kg.sh
/usr/share/java/snpEff/scripts/annotate_demo.sh
/usr/share/java/snpEff/scripts/annotate_demo_GATK.sh
/usr/share/java/snpEff/scripts/bedEffOnePerLine.pl
/usr/share/java/snpEff/scripts/buildDbNcbi.sh
/usr/share/java/snpEff/scripts/cgShore.pl
/usr/share/java/snpEff/scripts/cgShore.sh
/usr/share/java/snpEff/scripts/countColumns.py
/usr/share/java/snpEff/scripts/db.pl
/usr/share/java/snpEff/scripts/extractSequences.pl
/usr/share/java/snpEff/scripts/fasta2tab.pl
/usr/share/java/snpEff/scripts/fastaSample.pl
/usr/share/java/snpEff/scripts/fastaSplit.pl
/usr/share/java/snpEff/scripts/fastqSplit.pl
/usr/share/java/snpEff/scripts/filterBy.py
/usr/share/java/snpEff/scripts/gffRemovePhase.pl
/usr/share/java/snpEff/scripts/isutf8.py
/usr/share/java/snpEff/scripts/join.pl
/usr/share/java/snpEff/scripts/joinSnpEff.pl
/usr/share/java/snpEff/scripts/make_dbNSFP.sh
/usr/share/java/snpEff/scripts/nextProt_filter.pl
/usr/share/java/snpEff/scripts/ped2vcf.py
/usr/share/java/snpEff/scripts/plot.pl
/usr/share/java/snpEff/scripts/plotHistogram.pl
/usr/share/java/snpEff/scripts/plotLabel.pl
/usr/share/java/snpEff/scripts/plotMA.pl
/usr/share/java/snpEff/scripts/plotQQ.pl
/usr/share/java/snpEff/scripts/plotQQsubsample.pl
/usr/share/java/snpEff/scripts/plotSmoothScatter.pl
/usr/share/java/snpEff/scripts/plotXY.pl
/usr/share/java/snpEff/scripts/queue.pl
/usr/share/java/snpEff/scripts/sam2fastq.pl
/usr/share/java/snpEff/scripts/snpEff
/usr/share/java/snpEff/scripts/snpSift_filter_sample_to_number.pl
/usr/share/java/snpEff/scripts/sortLine.py
/usr/share/java/snpEff/scripts/splitChr.pl
/usr/share/java/snpEff/scripts/statsNum.pl
/usr/share/java/snpEff/scripts/swapCols.pl
/usr/share/java/snpEff/scripts/transpose.pl
/usr/share/java/snpEff/scripts/txt2fa.pl
/usr/share/java/snpEff/scripts/txt2vcf.py
/usr/share/java/snpEff/scripts/uniqCount.pl
/usr/share/java/snpEff/scripts/uniqCut.pl
/usr/share/java/snpEff/scripts/vcfAnnFirst.py
/usr/share/java/snpEff/scripts/vcfBareBones.pl
/usr/share/java/snpEff/scripts/vcfEffHighest.ORI.py
/usr/share/java/snpEff/scripts/vcfEffOnePerLine.pl
/usr/share/java/snpEff/scripts/vcfFilterSamples.pl
/usr/share/java/snpEff/scripts/vcfInfoOnePerLine.pl
/usr/share/java/snpEff/scripts/vcfOnlyAlts.pl
/usr/share/java/snpEff/scripts/vcfReduceGenotypes.pl
/usr/share/java/snpEff/scripts/vcfRefCorrect.py
/usr/share/java/snpEff/scripts/wigSplit.pl
/usr/share/java/snpEff/scripts/gsa/bayesFactor_correction_scoreCount.r
/usr/share/java/snpEff/scripts/gsa/bayesFactor_correction_scoreCount.sh
/usr/share/java/snpEff/scripts/gsa/bayesFactor_correction_scoreCount_max10.sh
/usr/share/java/snpEff/scripts/gsa/checkGeneNames.py
/usr/share/java/snpEff/scripts/gsa/create_sets.bds
/usr/share/java/snpEff/scripts/gsa/geneSetOverlap.py
/usr/share/java/snpEff/scripts/gsa/geneSetOverlap.sort.txt
/usr/share/java/snpEff/scripts/gsa/geneSetsGtex.py
/usr/share/java/snpEff/scripts/gsa/pvalue_correction_scoreCount.r
/usr/share/java/snpEff/scripts/gsa/pvalue_correction_scoreCount.sh
/usr/share/java/snpEff/scripts/gsa/pvalue_correction_scoreCount_min10.sh

See Also

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sofastats-1.4.3-noarch-1_slonly.txz Statistics Open For All
softhsm-2.2.0-i586-1_slonly.txz Software Hardware Security Module
soil-1.07-i586-1_slonly.txz C OpenGL texture library
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solarize-12x29-psf-20150529-noarch-1_slonly.txz large linux console font
solarus-1.5.1-i586-1_slonly.txz an ARPG game engine
solarus-quest-editor-1.5.2-i586-1_slonly.txz GUI to edit quests for the Solarus engine
solarwolf-1.5-i586-1_slonly.txz 2d arcade game
solfege-3.22.2-i586-1_slonly.txz music education software
solunar-0.1.0-i586-1_slonly.txz utility displaying sun- and moon-related data
sonata-1.6.2.1-i586-2_slonly.txz MPD client
sonic-visualiser-3.0.1-i586-1_slonly.txz audio file visualiser
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