samtools-0.1.19-i586-1_slonly.txz


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Description

samtools - Sequence Alignment/Map Tools

Distribution: Slackware 14.2
Repository: Slackonly i486
Package name: samtools
Package version: 0.1.19
Package release: 1_slonly
Package architecture: i586
Package type: txz
Installed size: 2.26 MB
Download size: 596.00 KB
Official Mirror: packages.slackonly.com
AM (Sequence Alignment/Map) format is a generic format for storing large nucleotide sequence alignments. SAM Tools provide various utilities for manipulating alignments in the SAM format, including sorting, merging, indexing and generating alignments in a per-position format. Home: http://samtools.sourceforge.net/ References: /usr/doc/samtools-0.1.19/References

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    Download

    Source package: unknown

    Install Howto

    1. Download samtools-0.1.19-i586-1_slonly.txz
    2. Install samtools txz package:
      # upgradepkg --install-new samtools-0.1.19-i586-1_slonly.txz

    Files

    • /install/slack-desc
    • /usr/
    • /usr/bin/bcftools
    • /usr/bin/razip
    • /usr/bin/samtools
    • /usr/bin/vcfutils.pl
    • /usr/doc/
    • /usr/doc/samtools-0.1.19/AUTHORS
    • /usr/doc/samtools-0.1.19/COPYING
    • /usr/doc/samtools-0.1.19/INSTALL
    • /usr/doc/samtools-0.1.19/NEWS
    • /usr/doc/samtools-0.1.19/References
    • /usr/doc/samtools-0.1.19/samtools.SlackBuild
    • /usr/include/
    • /usr/include/bam/bam.h
    • /usr/include/bam/bam2bcf.h
    • /usr/include/bam/bam_endian.h
    • /usr/include/bam/bam_tview.h
    • /usr/include/bam/bgzf.h
    • /usr/include/bam/errmod.h
    • /usr/include/bam/faidx.h
    • /usr/include/bam/kaln.h
    • /usr/include/bam/khash.h
    • /usr/include/bam/klist.h
    • /usr/include/bam/knetfile.h
    • /usr/include/bam/kprobaln.h
    • /usr/include/bam/kseq.h
    • /usr/include/bam/ksort.h
    • /usr/include/bam/kstring.h
    • /usr/include/bam/razf.h
    • /usr/include/bam/sam.h
    • /usr/include/bam/sam_header.h
    • /usr/include/bam/sample.h
    • /usr/lib/libbam.a
    • /usr/lib/libbcf.a
    • /usr/libexec/
    • /usr/libexec/samtools/ace2sam
    • /usr/libexec/samtools/bamcheck
    • /usr/libexec/samtools/maq2sam-long
    • /usr/libexec/samtools/maq2sam-short
    • /usr/libexec/samtools/md5fa
    • /usr/libexec/samtools/md5sum-lite
    • /usr/libexec/samtools/wgsim
    • /usr/man/
    • /usr/man/man1/samtools.1.gz
    • /usr/share/
    • /usr/share/samtools/blast2sam.pl
    • /usr/share/samtools/bowtie2sam.pl
    • /usr/share/samtools/export2sam.pl
    • /usr/share/samtools/interpolate_sam.pl
    • /usr/share/samtools/novo2sam.pl
    • /usr/share/samtools/plot-bamcheck
    • /usr/share/samtools/psl2sam.pl
    • /usr/share/samtools/r2plot.lua
    • /usr/share/samtools/sam2vcf.pl
    • /usr/share/samtools/samtools.pl
    • /usr/share/samtools/soap2sam.pl
    • /usr/share/samtools/varfilter.py
    • /usr/share/samtools/vcfutils.lua
    • /usr/share/samtools/wgsim_eval.pl
    • /usr/share/samtools/zoom2sam.pl
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