fastqc-0.11.5-noarch-1_slonly.txz


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Description

fastqc - A quality control tool for high throughput sequence data

Property Value
Distribution Slackware 14.2
Repository Slackonly i486
Package name fastqc
Package version 0.11.5
Package release 1_slonly
Package architecture noarch
Package type txz
Installed size 10.74 MB
Download size 9.29 MB
Official Mirror packages.slackonly.com
FastQC aims to provide a simple way to do some quality control
checks on raw sequence data coming from high throughput
sequencing pipelines. It provides a modular set of analyses
which you can use to give a quick impression of whether your
data has any problems of which you should be aware before
doing any further analysis.
Home: http://www.bioinformatics.babraham.ac.uk/projects/fastqc/

Alternatives

Package Version Architecture Repository
fastqc-0.11.7-noarch-1_slonly.txz 0.11.7 noarch Slackonly
fastqc - - -

Requires

Name Value
jdk -

Download

Type URL
Binary Package fastqc-0.11.5-noarch-1_slonly.txz
Source Package unknown

Install Howto

  1. Download fastqc-0.11.5-noarch-1_slonly.txz
  2. Install fastqc txz package:
    # upgradepkg --install-new fastqc-0.11.5-noarch-1_slonly.txz

Files

Path
/install/doinst.sh
/install/slack-desc
/install/slack-required
/usr/
/usr/bin/
/usr/doc/
/usr/doc/fastqc-0.11.5/INSTALL.txt
/usr/doc/fastqc-0.11.5/LICENSE.txt
/usr/doc/fastqc-0.11.5/LICENSE_JHDF5.txt
/usr/doc/fastqc-0.11.5/README.txt
/usr/doc/fastqc-0.11.5/RELEASE_NOTES.txt
/usr/doc/fastqc-0.11.5/fastqc.SlackBuild
/usr/doc/fastqc-0.11.5/Help/
/usr/doc/fastqc-0.11.5/Help/1 Introduction/1.1 What is FastQC.html
/usr/doc/fastqc-0.11.5/Help/2 Basic Operations/2.1 Opening a sequence file.html
/usr/doc/fastqc-0.11.5/Help/2 Basic Operations/2.2 Evaluating Results.html
/usr/doc/fastqc-0.11.5/Help/2 Basic Operations/2.3 Saving a Report.html
/usr/doc/fastqc-0.11.5/Help/3 Analysis Modules/1 Basic Statistics.html
/usr/doc/fastqc-0.11.5/Help/3 Analysis Modules/10 Adapter Content.html
/usr/doc/fastqc-0.11.5/Help/3 Analysis Modules/11 Kmer Content.html
/usr/doc/fastqc-0.11.5/Help/3 Analysis Modules/12 Per Tile Sequence Quality.html
/usr/doc/fastqc-0.11.5/Help/3 Analysis Modules/2 Per Base Sequence Quality.html
/usr/doc/fastqc-0.11.5/Help/3 Analysis Modules/3 Per Sequence Quality Scores.html
/usr/doc/fastqc-0.11.5/Help/3 Analysis Modules/4 Per Base Sequence Content.html
/usr/doc/fastqc-0.11.5/Help/3 Analysis Modules/5 Per Sequence GC Content.html
/usr/doc/fastqc-0.11.5/Help/3 Analysis Modules/6 Per Base N Content.html
/usr/doc/fastqc-0.11.5/Help/3 Analysis Modules/7 Sequence Length Distribution.html
/usr/doc/fastqc-0.11.5/Help/3 Analysis Modules/8 Duplicate Sequences.html
/usr/doc/fastqc-0.11.5/Help/3 Analysis Modules/9 Overrepresented Sequences.html
/usr/doc/fastqc-0.11.5/Help/3 Analysis Modules/duplication_levels.png
/usr/doc/fastqc-0.11.5/Help/3 Analysis Modules/kmer_profiles.png
/usr/doc/fastqc-0.11.5/Help/3 Analysis Modules/per_base_gc_content.png
/usr/doc/fastqc-0.11.5/Help/3 Analysis Modules/per_base_n_content.png
/usr/doc/fastqc-0.11.5/Help/3 Analysis Modules/per_base_quality.png
/usr/doc/fastqc-0.11.5/Help/3 Analysis Modules/per_base_sequence_content.png
/usr/doc/fastqc-0.11.5/Help/3 Analysis Modules/per_sequence_gc_content.png
/usr/doc/fastqc-0.11.5/Help/3 Analysis Modules/per_sequence_quality.png
/usr/doc/fastqc-0.11.5/Help/3 Analysis Modules/per_tile_quality.png
/usr/doc/fastqc-0.11.5/Help/3 Analysis Modules/sequence_length_distribution.png
/usr/share/
/usr/share/applications/fastqc.desktop
/usr/share/java/
/usr/share/java/fastqc/cisd-jhdf5.jar
/usr/share/java/fastqc/fastqc
/usr/share/java/fastqc/jbzip2-0.9.jar
/usr/share/java/fastqc/sam-1.103.jar
/usr/share/java/fastqc/Configuration/adapter_list.txt
/usr/share/java/fastqc/Configuration/contaminant_list.txt
/usr/share/java/fastqc/Configuration/limits.txt
/usr/share/java/fastqc/Templates/fastqc2fo.xsl
/usr/share/java/fastqc/Templates/header_template.html
/usr/share/java/fastqc/Templates/Icons/error.png
/usr/share/java/fastqc/Templates/Icons/fastqc_icon.png
/usr/share/java/fastqc/Templates/Icons/tick.png
/usr/share/java/fastqc/Templates/Icons/warning.png
/usr/share/java/fastqc/net/
/usr/share/java/fastqc/net/sourceforge/
/usr/share/java/fastqc/net/sourceforge/iharder/
/usr/share/java/fastqc/net/sourceforge/iharder/base64/Base64$1.class
/usr/share/java/fastqc/net/sourceforge/iharder/base64/Base64$InputStream.class
/usr/share/java/fastqc/net/sourceforge/iharder/base64/Base64$OutputStream.class
/usr/share/java/fastqc/net/sourceforge/iharder/base64/Base64.class
/usr/share/java/fastqc/org/
/usr/share/java/fastqc/org/apache/
/usr/share/java/fastqc/org/apache/commons/
/usr/share/java/fastqc/org/apache/commons/math3/
/usr/share/java/fastqc/org/apache/commons/math3/analysis/UnivariateFunction.class
/usr/share/java/fastqc/org/apache/commons/math3/analysis/solvers/AbstractUnivariateSolver.class
/usr/share/java/fastqc/org/apache/commons/math3/analysis/solvers/AllowedSolution.class
/usr/share/java/fastqc/org/apache/commons/math3/analysis/solvers/BaseAbstractUnivariateSolver.class
/usr/share/java/fastqc/org/apache/commons/math3/analysis/solvers/BaseUnivariateSolver.class
/usr/share/java/fastqc/org/apache/commons/math3/analysis/solvers/BracketedUnivariateSolver.class
/usr/share/java/fastqc/org/apache/commons/math3/analysis/solvers/BrentSolver.class
/usr/share/java/fastqc/org/apache/commons/math3/analysis/solvers/UnivariateSolver.class
/usr/share/java/fastqc/org/apache/commons/math3/analysis/solvers/UnivariateSolverUtils.class
/usr/share/java/fastqc/org/apache/commons/math3/distribution/AbstractIntegerDistribution.class
/usr/share/java/fastqc/org/apache/commons/math3/distribution/AbstractRealDistribution$1.class
/usr/share/java/fastqc/org/apache/commons/math3/distribution/AbstractRealDistribution.class
/usr/share/java/fastqc/org/apache/commons/math3/distribution/BetaDistribution.class
/usr/share/java/fastqc/org/apache/commons/math3/distribution/BinomialDistribution.class
/usr/share/java/fastqc/org/apache/commons/math3/distribution/CauchyDistribution.class
/usr/share/java/fastqc/org/apache/commons/math3/distribution/ChiSquaredDistribution.class
/usr/share/java/fastqc/org/apache/commons/math3/distribution/FDistribution.class
/usr/share/java/fastqc/org/apache/commons/math3/distribution/GammaDistribution.class
/usr/share/java/fastqc/org/apache/commons/math3/distribution/HypergeometricDistribution.class
/usr/share/java/fastqc/org/apache/commons/math3/distribution/IntegerDistribution.class
/usr/share/java/fastqc/org/apache/commons/math3/distribution/NormalDistribution.class
/usr/share/java/fastqc/org/apache/commons/math3/distribution/PascalDistribution.class
/usr/share/java/fastqc/org/apache/commons/math3/distribution/PoissonDistribution.class
/usr/share/java/fastqc/org/apache/commons/math3/distribution/RealDistribution.class
/usr/share/java/fastqc/org/apache/commons/math3/distribution/SaddlePointExpansion.class
/usr/share/java/fastqc/org/apache/commons/math3/distribution/TDistribution.class
/usr/share/java/fastqc/org/apache/commons/math3/distribution/WeibullDistribution.class
/usr/share/java/fastqc/org/apache/commons/math3/distribution/ZipfDistribution.class
/usr/share/java/fastqc/org/apache/commons/math3/exception/ConvergenceException.class
/usr/share/java/fastqc/org/apache/commons/math3/exception/DimensionMismatchException.class
/usr/share/java/fastqc/org/apache/commons/math3/exception/MathArithmeticException.class
/usr/share/java/fastqc/org/apache/commons/math3/exception/MathIllegalArgumentException.class
/usr/share/java/fastqc/org/apache/commons/math3/exception/MathIllegalNumberException.class
/usr/share/java/fastqc/org/apache/commons/math3/exception/MathIllegalStateException.class
/usr/share/java/fastqc/org/apache/commons/math3/exception/MathInternalError.class
/usr/share/java/fastqc/org/apache/commons/math3/exception/MaxCountExceededException.class
/usr/share/java/fastqc/org/apache/commons/math3/exception/NoBracketingException.class
/usr/share/java/fastqc/org/apache/commons/math3/exception/NotFiniteNumberException.class
/usr/share/java/fastqc/org/apache/commons/math3/exception/NotPositiveException.class
/usr/share/java/fastqc/org/apache/commons/math3/exception/NotStrictlyPositiveException.class
/usr/share/java/fastqc/org/apache/commons/math3/exception/NullArgumentException.class
/usr/share/java/fastqc/org/apache/commons/math3/exception/NumberIsTooLargeException.class
/usr/share/java/fastqc/org/apache/commons/math3/exception/NumberIsTooSmallException.class
/usr/share/java/fastqc/org/apache/commons/math3/exception/OutOfRangeException.class
/usr/share/java/fastqc/org/apache/commons/math3/exception/TooManyEvaluationsException.class
/usr/share/java/fastqc/org/apache/commons/math3/exception/util/ArgUtils.class
/usr/share/java/fastqc/org/apache/commons/math3/exception/util/ExceptionContext.class
/usr/share/java/fastqc/org/apache/commons/math3/exception/util/ExceptionContextProvider.class
/usr/share/java/fastqc/org/apache/commons/math3/exception/util/Localizable.class
/usr/share/java/fastqc/org/apache/commons/math3/exception/util/LocalizedFormats.class
/usr/share/java/fastqc/org/apache/commons/math3/random/AbstractWell.class
/usr/share/java/fastqc/org/apache/commons/math3/random/BitsStreamGenerator.class
/usr/share/java/fastqc/org/apache/commons/math3/random/RandomData.class
/usr/share/java/fastqc/org/apache/commons/math3/random/RandomDataImpl.class
/usr/share/java/fastqc/org/apache/commons/math3/random/RandomGenerator.class
/usr/share/java/fastqc/org/apache/commons/math3/random/Well19937c.class
/usr/share/java/fastqc/org/apache/commons/math3/special/Beta$1.class
/usr/share/java/fastqc/org/apache/commons/math3/special/Beta.class
/usr/share/java/fastqc/org/apache/commons/math3/special/Erf.class
/usr/share/java/fastqc/org/apache/commons/math3/special/Gamma$1.class
/usr/share/java/fastqc/org/apache/commons/math3/special/Gamma.class
/usr/share/java/fastqc/org/apache/commons/math3/util/ArithmeticUtils.class
/usr/share/java/fastqc/org/apache/commons/math3/util/ContinuedFraction.class
/usr/share/java/fastqc/org/apache/commons/math3/util/DoubleArray.class
/usr/share/java/fastqc/org/apache/commons/math3/util/FastMath$ExpFracTable.class
/usr/share/java/fastqc/org/apache/commons/math3/util/FastMath$ExpIntTable.class
/usr/share/java/fastqc/org/apache/commons/math3/util/FastMath$lnMant.class
/usr/share/java/fastqc/org/apache/commons/math3/util/FastMath.class
/usr/share/java/fastqc/org/apache/commons/math3/util/FastMathCalc.class
/usr/share/java/fastqc/org/apache/commons/math3/util/FastMathLiteralArrays.class
/usr/share/java/fastqc/org/apache/commons/math3/util/Incrementor$1.class
/usr/share/java/fastqc/org/apache/commons/math3/util/Incrementor$MaxCountExceededCallback.class
/usr/share/java/fastqc/org/apache/commons/math3/util/Incrementor.class
/usr/share/java/fastqc/org/apache/commons/math3/util/MathUtils.class
/usr/share/java/fastqc/org/apache/commons/math3/util/Precision.class
/usr/share/java/fastqc/org/apache/commons/math3/util/ResizableDoubleArray.class
/usr/share/java/fastqc/uk/
/usr/share/java/fastqc/uk/ac/
/usr/share/java/fastqc/uk/ac/babraham/
/usr/share/java/fastqc/uk/ac/babraham/FastQC/FastQCApplication$1.class
/usr/share/java/fastqc/uk/ac/babraham/FastQC/FastQCApplication.class
/usr/share/java/fastqc/uk/ac/babraham/FastQC/FastQCConfig.class
/usr/share/java/fastqc/uk/ac/babraham/FastQC/FastQCMenuBar.class
/usr/share/java/fastqc/uk/ac/babraham/FastQC/Analysis/AnalysisListener.class
/usr/share/java/fastqc/uk/ac/babraham/FastQC/Analysis/AnalysisQueue.class
/usr/share/java/fastqc/uk/ac/babraham/FastQC/Analysis/AnalysisRunner.class
/usr/share/java/fastqc/uk/ac/babraham/FastQC/Analysis/OfflineRunner.class
/usr/share/java/fastqc/uk/ac/babraham/FastQC/Dialogs/AboutDialog$1.class
/usr/share/java/fastqc/uk/ac/babraham/FastQC/Dialogs/AboutDialog.class
/usr/share/java/fastqc/uk/ac/babraham/FastQC/Dialogs/FastQCTitlePanel$SmoothJLabel.class
/usr/share/java/fastqc/uk/ac/babraham/FastQC/Dialogs/FastQCTitlePanel.class
/usr/share/java/fastqc/uk/ac/babraham/FastQC/Dialogs/WelcomePanel.class
/usr/share/java/fastqc/uk/ac/babraham/FastQC/FileFilters/BAMFileFilter.class
/usr/share/java/fastqc/uk/ac/babraham/FastQC/FileFilters/CasavaFastQFileFilter.class
/usr/share/java/fastqc/uk/ac/babraham/FastQC/FileFilters/FastQFileFilter.class
/usr/share/java/fastqc/uk/ac/babraham/FastQC/FileFilters/GobyFileFilter.class
/usr/share/java/fastqc/uk/ac/babraham/FastQC/FileFilters/MappedBAMFileFilter.class
/usr/share/java/fastqc/uk/ac/babraham/FastQC/FileFilters/SequenceFileFilter.class
/usr/share/java/fastqc/uk/ac/babraham/FastQC/Graphs/BaseGroup.class
/usr/share/java/fastqc/uk/ac/babraham/FastQC/Graphs/LineGraph.class
/usr/share/java/fastqc/uk/ac/babraham/FastQC/Graphs/QualityBoxPlot.class
/usr/share/java/fastqc/uk/ac/babraham/FastQC/Graphs/TileGraph.class
/usr/share/java/fastqc/uk/ac/babraham/FastQC/Help/HelpDialog.class
/usr/share/java/fastqc/uk/ac/babraham/FastQC/Help/HelpIndexRoot$FileSorter.class
/usr/share/java/fastqc/uk/ac/babraham/FastQC/Help/HelpIndexRoot.class
/usr/share/java/fastqc/uk/ac/babraham/FastQC/Help/HelpPage.class
/usr/share/java/fastqc/uk/ac/babraham/FastQC/Help/HelpPageDisplay$HelpEditor.class
/usr/share/java/fastqc/uk/ac/babraham/FastQC/Help/HelpPageDisplay.class
/usr/share/java/fastqc/uk/ac/babraham/FastQC/Help/HelpSearchPanel.class
/usr/share/java/fastqc/uk/ac/babraham/FastQC/Modules/AbstractQCModule.class
/usr/share/java/fastqc/uk/ac/babraham/FastQC/Modules/AdapterContent$Adapter.class
/usr/share/java/fastqc/uk/ac/babraham/FastQC/Modules/AdapterContent$ResultsTable.class
/usr/share/java/fastqc/uk/ac/babraham/FastQC/Modules/AdapterContent.class
/usr/share/java/fastqc/uk/ac/babraham/FastQC/Modules/BasicStats$ResultsTable.class
/usr/share/java/fastqc/uk/ac/babraham/FastQC/Modules/BasicStats.class
/usr/share/java/fastqc/uk/ac/babraham/FastQC/Modules/DuplicationLevel.class
/usr/share/java/fastqc/uk/ac/babraham/FastQC/Modules/KmerContent$Kmer.class
/usr/share/java/fastqc/uk/ac/babraham/FastQC/Modules/KmerContent$ResultsTable.class
/usr/share/java/fastqc/uk/ac/babraham/FastQC/Modules/KmerContent.class
/usr/share/java/fastqc/uk/ac/babraham/FastQC/Modules/ModuleConfig.class
/usr/share/java/fastqc/uk/ac/babraham/FastQC/Modules/ModuleFactory.class
/usr/share/java/fastqc/uk/ac/babraham/FastQC/Modules/NContent.class
/usr/share/java/fastqc/uk/ac/babraham/FastQC/Modules/OverRepresentedSeqs$OverrepresentedSeq.class
/usr/share/java/fastqc/uk/ac/babraham/FastQC/Modules/OverRepresentedSeqs$ResultsTable.class
/usr/share/java/fastqc/uk/ac/babraham/FastQC/Modules/OverRepresentedSeqs.class
/usr/share/java/fastqc/uk/ac/babraham/FastQC/Modules/PerBaseQualityScores.class
/usr/share/java/fastqc/uk/ac/babraham/FastQC/Modules/PerBaseSequenceContent.class
/usr/share/java/fastqc/uk/ac/babraham/FastQC/Modules/PerSequenceGCContent.class
/usr/share/java/fastqc/uk/ac/babraham/FastQC/Modules/PerSequenceQualityScores.class
/usr/share/java/fastqc/uk/ac/babraham/FastQC/Modules/PerTileQualityScores.class
/usr/share/java/fastqc/uk/ac/babraham/FastQC/Modules/QCModule.class
/usr/share/java/fastqc/uk/ac/babraham/FastQC/Modules/SequenceLengthDistribution.class
/usr/share/java/fastqc/uk/ac/babraham/FastQC/Modules/GCModel/GCModel.class
/usr/share/java/fastqc/uk/ac/babraham/FastQC/Modules/GCModel/GCModelValue.class
/usr/share/java/fastqc/uk/ac/babraham/FastQC/Report/HTMLReportArchive.class
/usr/share/java/fastqc/uk/ac/babraham/FastQC/Report/stylesheet.txt
/usr/share/java/fastqc/uk/ac/babraham/FastQC/Resources/error.png
/usr/share/java/fastqc/uk/ac/babraham/FastQC/Resources/fastqc_icon.png
/usr/share/java/fastqc/uk/ac/babraham/FastQC/Resources/fastqc_icon.svg
/usr/share/java/fastqc/uk/ac/babraham/FastQC/Resources/fastqc_icon_100.png
/usr/share/java/fastqc/uk/ac/babraham/FastQC/Resources/tick.png
/usr/share/java/fastqc/uk/ac/babraham/FastQC/Resources/warning.png
/usr/share/java/fastqc/uk/ac/babraham/FastQC/Results/ResultsPanel$ModuleRenderer.class
/usr/share/java/fastqc/uk/ac/babraham/FastQC/Results/ResultsPanel.class
/usr/share/java/fastqc/uk/ac/babraham/FastQC/Sequence/BAMFile.class
/usr/share/java/fastqc/uk/ac/babraham/FastQC/Sequence/Fast5File.class
/usr/share/java/fastqc/uk/ac/babraham/FastQC/Sequence/FastQFile.class
/usr/share/java/fastqc/uk/ac/babraham/FastQC/Sequence/Sequence.class
/usr/share/java/fastqc/uk/ac/babraham/FastQC/Sequence/SequenceFactory.class
/usr/share/java/fastqc/uk/ac/babraham/FastQC/Sequence/SequenceFile.class
/usr/share/java/fastqc/uk/ac/babraham/FastQC/Sequence/SequenceFileGroup.class
/usr/share/java/fastqc/uk/ac/babraham/FastQC/Sequence/SequenceFormatException.class
/usr/share/java/fastqc/uk/ac/babraham/FastQC/Sequence/Contaminant/Contaminant.class
/usr/share/java/fastqc/uk/ac/babraham/FastQC/Sequence/Contaminant/ContaminantHit.class
/usr/share/java/fastqc/uk/ac/babraham/FastQC/Sequence/Contaminant/ContaminentFinder.class
/usr/share/java/fastqc/uk/ac/babraham/FastQC/Sequence/QualityEncoding/PhredEncoding.class
/usr/share/java/fastqc/uk/ac/babraham/FastQC/Statistics/NormalDistribution.class
/usr/share/java/fastqc/uk/ac/babraham/FastQC/Statistics/PearsonCorrelation.class
/usr/share/java/fastqc/uk/ac/babraham/FastQC/Utilities/CasavaBasename.class
/usr/share/java/fastqc/uk/ac/babraham/FastQC/Utilities/HotColdColourGradient.class
/usr/share/java/fastqc/uk/ac/babraham/FastQC/Utilities/ImageToBase64.class
/usr/share/java/fastqc/uk/ac/babraham/FastQC/Utilities/MultiMemberGZIPInputStream.class
/usr/share/java/fastqc/uk/ac/babraham/FastQC/Utilities/NameFormatException.class
/usr/share/java/fastqc/uk/ac/babraham/FastQC/Utilities/NanoporeBasename.class
/usr/share/java/fastqc/uk/ac/babraham/FastQC/Utilities/QualityCount.class
/usr/share/java/fastqc/uk/ac/babraham/FastQC/Utilities/RGB.class
/usr/share/pixmaps/fastqc.png

See Also

Package Description
faust-0.9.58-i586-1_slonly.txz Functional Audio Stream
fbalpha-2017.01.25_c4c9fb5-i586-1_slonly.txz libretro port of Final Burn Alpha v0.2.97.38
fbcat-0.4.4-i586-1_slonly.txz take screenshots of the framebuffer console
fbdump-0.4.2-i586-2_slonly.txz captures the visible portion of framebuffer to stdout
fbida-2.13-i586-1_slonly.txz image viewer for framebuffer console
fbmenugen-0.78-i586-1_slonly.txz A simple menu generator for the Fluxbox Window Manager
fbpanel-6.1-i586-1_slonly.txz panel application
fbpdf-20161202-i586-1_slonly.txz PDF viewer for the Linux framebuffer
fbpic-0.0.2-i586-1_slonly.txz display an image on the framebuffer
fbreader-0.99.4-i586-1_slonly.txz e-book reader
fbrowse-tray-0.07-i586-1_slonly.txz A file-browser through a Gtk2 tray status icon
fbterm-1.8-i586-1_slonly.txz fast framebuffer based terminal emulator for linux
fbv-1.0b-i586-1_slonly.txz image viewer for framebuffer console
fceux-2.2.3-i586-1_slonly.txz An 8-bit NES emulator based on FCE Ultra
fcgi-2.4.0-i586-1_slonly.txz Fast CGI library
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