bpp-phyl-git_bf2e0d6-i586-1_slonly.txz


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Description

bpp-phyl - Bio++ Phylogenetic Library

Distribution: Slackware 14.2
Repository: Slackonly i486
Package name: bpp-phyl
Package version: git_bf2e0d6
Package release: 1_slonly
Package architecture: i586
Package type: txz
Installed size: 34.63 MB
Download size: 4.24 MB
Official Mirror: packages.slackonly.com
Contains the Bio++ Phylogenetic Library. Git: https://github.com/BioPP/bpp-phyl

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Requires

    Download

    Source package: unknown

    Install Howto

    1. Download bpp-phyl-git_bf2e0d6-i586-1_slonly.txz
    2. Install bpp-phyl txz package:
      # upgradepkg --install-new bpp-phyl-git_bf2e0d6-i586-1_slonly.txz

    Files

    • /install/doinst.sh
    • /install/slack-desc
    • /install/slack-required
    • /usr/
    • /usr/doc/
    • /usr/doc/bpp-phyl-git_bf2e0d6/AUTHORS.txt
    • /usr/doc/bpp-phyl-git_bf2e0d6/COPYING.txt
    • /usr/doc/bpp-phyl-git_bf2e0d6/ChangeLog
    • /usr/doc/bpp-phyl-git_bf2e0d6/INSTALL.txt
    • /usr/doc/bpp-phyl-git_bf2e0d6/bpp-phyl.SlackBuild
    • /usr/include/
    • /usr/include/Bpp/
    • /usr/include/Bpp/Phyl/AncestralStateReconstruction.h
    • /usr/include/Bpp/Phyl/BipartitionList.h
    • /usr/include/Bpp/Phyl/BipartitionTools.h
    • /usr/include/Bpp/Phyl/NNISearchable.h
    • /usr/include/Bpp/Phyl/NNITopologySearch.h
    • /usr/include/Bpp/Phyl/Node.h
    • /usr/include/Bpp/Phyl/NodeTemplate.h
    • /usr/include/Bpp/Phyl/OptimizationTools.h
    • /usr/include/Bpp/Phyl/PatternTools.h
    • /usr/include/Bpp/Phyl/PhyloStatistics.h
    • /usr/include/Bpp/Phyl/SitePatterns.h
    • /usr/include/Bpp/Phyl/TopologySearch.h
    • /usr/include/Bpp/Phyl/Tree.h
    • /usr/include/Bpp/Phyl/TreeExceptions.h
    • /usr/include/Bpp/Phyl/TreeTemplate.h
    • /usr/include/Bpp/Phyl/TreeTemplateTools.h
    • /usr/include/Bpp/Phyl/TreeTools.h
    • /usr/include/Bpp/Phyl/App/PhylogeneticsApplicationTools.h
    • /usr/include/Bpp/Phyl/Distance/AbstractAgglomerativeDistanceMethod.h
    • /usr/include/Bpp/Phyl/Distance/BioNJ.h
    • /usr/include/Bpp/Phyl/Distance/DistanceEstimation.h
    • /usr/include/Bpp/Phyl/Distance/DistanceMethod.h
    • /usr/include/Bpp/Phyl/Distance/HierarchicalClustering.h
    • /usr/include/Bpp/Phyl/Distance/NeighborJoining.h
    • /usr/include/Bpp/Phyl/Distance/PGMA.h
    • /usr/include/Bpp/Phyl/Graphics/AbstractDendrogramPlot.h
    • /usr/include/Bpp/Phyl/Graphics/AbstractTreeDrawing.h
    • /usr/include/Bpp/Phyl/Graphics/CladogramPlot.h
    • /usr/include/Bpp/Phyl/Graphics/PhylogramPlot.h
    • /usr/include/Bpp/Phyl/Graphics/TreeDrawing.h
    • /usr/include/Bpp/Phyl/Graphics/TreeDrawingDisplayControler.h
    • /usr/include/Bpp/Phyl/Graphics/TreeDrawingListener.h
    • /usr/include/Bpp/Phyl/Io/BppOFrequenciesSetFormat.h
    • /usr/include/Bpp/Phyl/Io/BppOMultiTreeReaderFormat.h
    • /usr/include/Bpp/Phyl/Io/BppOMultiTreeWriterFormat.h
    • /usr/include/Bpp/Phyl/Io/BppORateDistributionFormat.h
    • /usr/include/Bpp/Phyl/Io/BppOSubstitutionModelFormat.h
    • /usr/include/Bpp/Phyl/Io/BppOTreeReaderFormat.h
    • /usr/include/Bpp/Phyl/Io/BppOTreeWriterFormat.h
    • /usr/include/Bpp/Phyl/Io/IoDistanceMatrix.h
    • /usr/include/Bpp/Phyl/Io/IoDistanceMatrixFactory.h
    • /usr/include/Bpp/Phyl/Io/IoFrequenciesSet.h
    • /usr/include/Bpp/Phyl/Io/IoFrequenciesSetFactory.h
    • /usr/include/Bpp/Phyl/Io/IoPairedSiteLikelihoods.h
    • /usr/include/Bpp/Phyl/Io/IoSubstitutionModel.h
    • /usr/include/Bpp/Phyl/Io/IoSubstitutionModelFactory.h
    • /usr/include/Bpp/Phyl/Io/IoTree.h
    • /usr/include/Bpp/Phyl/Io/IoTreeFactory.h
    • /usr/include/Bpp/Phyl/Io/Newick.h
    • /usr/include/Bpp/Phyl/Io/NexusIoTree.h
    • /usr/include/Bpp/Phyl/Io/Nhx.h
    • /usr/include/Bpp/Phyl/Io/PhylipDistanceMatrixFormat.h
    • /usr/include/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h
    • /usr/include/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h
    • /usr/include/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h
    • /usr/include/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h
    • /usr/include/Bpp/Phyl/Likelihood/AbstractTreeLikelihoodData.h
    • /usr/include/Bpp/Phyl/Likelihood/ClockTreeLikelihood.h
    • /usr/include/Bpp/Phyl/Likelihood/DRASDRTreeLikelihoodData.h
    • /usr/include/Bpp/Phyl/Likelihood/DRASRTreeLikelihoodData.h
    • /usr/include/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.h
    • /usr/include/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h
    • /usr/include/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.h
    • /usr/include/Bpp/Phyl/Likelihood/DRTreeLikelihood.h
    • /usr/include/Bpp/Phyl/Likelihood/DRTreeLikelihoodTools.h
    • /usr/include/Bpp/Phyl/Likelihood/DiscreteRatesAcrossSitesTreeLikelihood.h
    • /usr/include/Bpp/Phyl/Likelihood/GlobalClockTreeLikelihoodFunctionWrapper.h
    • /usr/include/Bpp/Phyl/Likelihood/HomogeneousTreeLikelihood.h
    • /usr/include/Bpp/Phyl/Likelihood/MarginalAncestralStateReconstruction.h
    • /usr/include/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.h
    • /usr/include/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h
    • /usr/include/Bpp/Phyl/Likelihood/PairedSiteLikelihoods.h
    • /usr/include/Bpp/Phyl/Likelihood/PseudoNewtonOptimizer.h
    • /usr/include/Bpp/Phyl/Likelihood/RASTools.h
    • /usr/include/Bpp/Phyl/Likelihood/RHomogeneousClockTreeLikelihood.h
    • /usr/include/Bpp/Phyl/Likelihood/RHomogeneousMixedTreeLikelihood.h
    • /usr/include/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.h
    • /usr/include/Bpp/Phyl/Likelihood/RNonHomogeneousMixedTreeLikelihood.h
    • /usr/include/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.h
    • /usr/include/Bpp/Phyl/Likelihood/SitePartitionTreeLikelihood.h
    • /usr/include/Bpp/Phyl/Likelihood/TreeLikelihood.h
    • /usr/include/Bpp/Phyl/Likelihood/TreeLikelihoodData.h
    • /usr/include/Bpp/Phyl/Likelihood/TreeLikelihoodTools.h
    • /usr/include/Bpp/Phyl/Mapping/CategorySubstitutionRegister.h
    • /usr/include/Bpp/Phyl/Mapping/DecompositionReward.h
    • /usr/include/Bpp/Phyl/Mapping/DecompositionSubstitutionCount.h
    • /usr/include/Bpp/Phyl/Mapping/LaplaceSubstitutionCount.h
    • /usr/include/Bpp/Phyl/Mapping/Mapping.h
    • /usr/include/Bpp/Phyl/Mapping/NaiveSubstitutionCount.h
    • /usr/include/Bpp/Phyl/Mapping/OneJumpSubstitutionCount.h
    • /usr/include/Bpp/Phyl/Mapping/ProbabilisticRewardMapping.h
    • /usr/include/Bpp/Phyl/Mapping/ProbabilisticSubstitutionMapping.h
    • /usr/include/Bpp/Phyl/Mapping/Reward.h
    • /usr/include/Bpp/Phyl/Mapping/RewardMapping.h
    • /usr/include/Bpp/Phyl/Mapping/RewardMappingTools.h
    • /usr/include/Bpp/Phyl/Mapping/SubstitutionCount.h
    • /usr/include/Bpp/Phyl/Mapping/SubstitutionMapping.h
    • /usr/include/Bpp/Phyl/Mapping/SubstitutionMappingTools.h
    • /usr/include/Bpp/Phyl/Mapping/SubstitutionRegister.h
    • /usr/include/Bpp/Phyl/Mapping/UniformizationSubstitutionCount.h
    • /usr/include/Bpp/Phyl/Mapping/WeightedSubstitutionCount.h
    • /usr/include/Bpp/Phyl/Model/AbstractBiblioMixedSubstitutionModel.h
    • /usr/include/Bpp/Phyl/Model/AbstractBiblioSubstitutionModel.h
    • /usr/include/Bpp/Phyl/Model/AbstractKroneckerWordSubstitutionModel.h
    • /usr/include/Bpp/Phyl/Model/AbstractMixedSubstitutionModel.h
    • /usr/include/Bpp/Phyl/Model/AbstractSubstitutionModel.h
    • /usr/include/Bpp/Phyl/Model/AbstractWordSubstitutionModel.h
    • /usr/include/Bpp/Phyl/Model/BinarySubstitutionModel.h
    • /usr/include/Bpp/Phyl/Model/FromMixtureSubstitutionModel.h
    • /usr/include/Bpp/Phyl/Model/G2001.h
    • /usr/include/Bpp/Phyl/Model/KroneckerWordSubstitutionModel.h
    • /usr/include/Bpp/Phyl/Model/MarkovModulatedSubstitutionModel.h
    • /usr/include/Bpp/Phyl/Model/MixedSubstitutionModel.h
    • /usr/include/Bpp/Phyl/Model/MixedSubstitutionModelSet.h
    • /usr/include/Bpp/Phyl/Model/MixtureOfASubstitutionModel.h
    • /usr/include/Bpp/Phyl/Model/MixtureOfSubstitutionModels.h
    • /usr/include/Bpp/Phyl/Model/RE08.h
    • /usr/include/Bpp/Phyl/Model/StateMap.h
    • /usr/include/Bpp/Phyl/Model/SubstitutionModel.h
    • /usr/include/Bpp/Phyl/Model/SubstitutionModelSet.h
    • /usr/include/Bpp/Phyl/Model/SubstitutionModelSetTools.h
    • /usr/include/Bpp/Phyl/Model/TS98.h
    • /usr/include/Bpp/Phyl/Model/WordSubstitutionModel.h
    • /usr/include/Bpp/Phyl/Model/Codon/AbstractCodonCpGSubstitutionModel.h
    • /usr/include/Bpp/Phyl/Model/Codon/AbstractCodonDistanceSubstitutionModel.h
    • /usr/include/Bpp/Phyl/Model/Codon/AbstractCodonFitnessSubstitutionModel.h
    • /usr/include/Bpp/Phyl/Model/Codon/AbstractCodonFrequenciesSubstitutionModel.h
    • /usr/include/Bpp/Phyl/Model/Codon/AbstractCodonPhaseFrequenciesSubstitutionModel.h
    • /usr/include/Bpp/Phyl/Model/Codon/AbstractCodonSubstitutionModel.h
    • /usr/include/Bpp/Phyl/Model/Codon/AbstractKroneckerCodonSubstitutionModel.h
    • /usr/include/Bpp/Phyl/Model/Codon/CodonDistanceCpGSubstitutionModel.h
    • /usr/include/Bpp/Phyl/Model/Codon/CodonDistanceFrequenciesSubstitutionModel.h
    • /usr/include/Bpp/Phyl/Model/Codon/CodonDistancePhaseFrequenciesSubstitutionModel.h
    • /usr/include/Bpp/Phyl/Model/Codon/CodonDistanceSubstitutionModel.h
    • /usr/include/Bpp/Phyl/Model/Codon/CodonRateFrequenciesSubstitutionModel.h
    • /usr/include/Bpp/Phyl/Model/Codon/CodonRateSubstitutionModel.h
    • /usr/include/Bpp/Phyl/Model/Codon/CodonSubstitutionModel.h
    • /usr/include/Bpp/Phyl/Model/Codon/GY94.h
    • /usr/include/Bpp/Phyl/Model/Codon/KCM.h
    • /usr/include/Bpp/Phyl/Model/Codon/KroneckerCodonDistanceFrequenciesSubstitutionModel.h
    • /usr/include/Bpp/Phyl/Model/Codon/KroneckerCodonDistanceSubstitutionModel.h
    • /usr/include/Bpp/Phyl/Model/Codon/MG94.h
    • /usr/include/Bpp/Phyl/Model/Codon/SENCA.h
    • /usr/include/Bpp/Phyl/Model/Codon/TripletSubstitutionModel.h
    • /usr/include/Bpp/Phyl/Model/Codon/YN98.h
    • /usr/include/Bpp/Phyl/Model/Codon/YNGP_M1.h
    • /usr/include/Bpp/Phyl/Model/Codon/YNGP_M10.h
    • /usr/include/Bpp/Phyl/Model/Codon/YNGP_M2.h
    • /usr/include/Bpp/Phyl/Model/Codon/YNGP_M3.h
    • /usr/include/Bpp/Phyl/Model/Codon/YNGP_M7.h
    • /usr/include/Bpp/Phyl/Model/Codon/YNGP_M8.h
    • /usr/include/Bpp/Phyl/Model/Codon/YNGP_M9.h
    • /usr/include/Bpp/Phyl/Model/FrequenciesSet/CodonFrequenciesSet.h
    • /usr/include/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h
    • /usr/include/Bpp/Phyl/Model/FrequenciesSet/MvaFrequenciesSet.h
    • /usr/include/Bpp/Phyl/Model/FrequenciesSet/NucleotideFrequenciesSet.h
    • /usr/include/Bpp/Phyl/Model/FrequenciesSet/ProteinFrequenciesSet.h
    • /usr/include/Bpp/Phyl/Model/FrequenciesSet/WordFrequenciesSet.h
    • /usr/include/Bpp/Phyl/Model/Nucleotide/F84.h
    • /usr/include/Bpp/Phyl/Model/Nucleotide/GTR.h
    • /usr/include/Bpp/Phyl/Model/Nucleotide/HKY85.h
    • /usr/include/Bpp/Phyl/Model/Nucleotide/JCnuc.h
    • /usr/include/Bpp/Phyl/Model/Nucleotide/K80.h
    • /usr/include/Bpp/Phyl/Model/Nucleotide/L95.h
    • /usr/include/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h
    • /usr/include/Bpp/Phyl/Model/Nucleotide/RN95.h
    • /usr/include/Bpp/Phyl/Model/Nucleotide/RN95s.h
    • /usr/include/Bpp/Phyl/Model/Nucleotide/SSR.h
    • /usr/include/Bpp/Phyl/Model/Nucleotide/T92.h
    • /usr/include/Bpp/Phyl/Model/Nucleotide/TN93.h
    • /usr/include/Bpp/Phyl/Model/Nucleotide/YpR.h
    • /usr/include/Bpp/Phyl/Model/Nucleotide/gBGC.h
    • /usr/include/Bpp/Phyl/Model/Protein/Coala.h
    • /usr/include/Bpp/Phyl/Model/Protein/CoalaCore.h
    • /usr/include/Bpp/Phyl/Model/Protein/DSO78.h
    • /usr/include/Bpp/Phyl/Model/Protein/JCprot.h
    • /usr/include/Bpp/Phyl/Model/Protein/JTT92.h
    • /usr/include/Bpp/Phyl/Model/Protein/LG08.h
    • /usr/include/Bpp/Phyl/Model/Protein/LG10_EX_EHO.h
    • /usr/include/Bpp/Phyl/Model/Protein/LGL08_CAT.h
    • /usr/include/Bpp/Phyl/Model/Protein/LLG08_EHO.h
    • /usr/include/Bpp/Phyl/Model/Protein/LLG08_EX2.h
    • /usr/include/Bpp/Phyl/Model/Protein/LLG08_EX3.h
    • /usr/include/Bpp/Phyl/Model/Protein/LLG08_UL2.h
    • /usr/include/Bpp/Phyl/Model/Protein/LLG08_UL3.h
    • /usr/include/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h
    • /usr/include/Bpp/Phyl/Model/Protein/UserProteinSubstitutionModel.h
    • /usr/include/Bpp/Phyl/Model/Protein/WAG01.h
    • /usr/include/Bpp/Phyl/Model/RateDistribution/ConstantRateDistribution.h
    • /usr/include/Bpp/Phyl/Model/RateDistribution/ExponentialDiscreteRateDistribution.h
    • /usr/include/Bpp/Phyl/Model/RateDistribution/GammaDiscreteRateDistribution.h
    • /usr/include/Bpp/Phyl/Model/RateDistribution/GaussianDiscreteRateDistribution.h
    • /usr/include/Bpp/Phyl/Parsimony/AbstractTreeParsimonyData.h
    • /usr/include/Bpp/Phyl/Parsimony/AbstractTreeParsimonyScore.h
    • /usr/include/Bpp/Phyl/Parsimony/DRTreeParsimonyData.h
    • /usr/include/Bpp/Phyl/Parsimony/DRTreeParsimonyScore.h
    • /usr/include/Bpp/Phyl/Parsimony/TreeParsimonyData.h
    • /usr/include/Bpp/Phyl/Parsimony/TreeParsimonyScore.h
    • /usr/include/Bpp/Phyl/Simulation/DetailedSiteSimulator.h
    • /usr/include/Bpp/Phyl/Simulation/HomogeneousSequenceSimulator.h
    • /usr/include/Bpp/Phyl/Simulation/MutationProcess.h
    • /usr/include/Bpp/Phyl/Simulation/NonHomogeneousSequenceSimulator.h
    • /usr/include/Bpp/Phyl/Simulation/SequenceSimulationTools.h
    • /usr/include/Bpp/Phyl/Simulation/SequenceSimulator.h
    • /usr/include/Bpp/Phyl/Simulation/SiteSimulator.h
    • /usr/lib/libbpp-phyl.a
    • /usr/lib/libbpp-phyl.so.9.1.3
    • /usr/lib/cmake/
    • /usr/lib/cmake/bpp-phyl/bpp-phyl-config-version.cmake
    • /usr/lib/cmake/bpp-phyl/bpp-phyl-config.cmake
    • /usr/lib/cmake/bpp-phyl/bpp-phyl-targets-release.cmake
    • /usr/lib/cmake/bpp-phyl/bpp-phyl-targets.cmake
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