bowtie2-2.1.0-i586-1_slonly.txz


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Description

bowtie2 - A tool for aligning sequencing reads

Property Value
Distribution Slackware 14.2
Repository Slackonly i486
Package filename bowtie2-2.1.0-i586-1_slonly.txz
Package name bowtie2
Package version 2.1.0
Package release 1_slonly
Package architecture i586
Package type txz
Homepage -
License -
Maintainer -
Download size 5.46 MB
Installed size 7.54 MB
Bowtie 2 is an ultrafast and memory-efficient tool for aligning
sequencing reads to long reference sequences. It is particularly
good at aligning reads of about 50 up to 100s or 1,000s of
characters, and particularly good at aligning to relatively long
(e.g. mammalian) genomes.
Home: http://bowtie-bio.sourceforge.net/bowtie2/index.shtml
References: /usr/doc/bowtie2-2.1.0/References

Alternatives

Package Version Architecture Repository
bowtie2-2.1.0-x86_64-1_slonly.txz 2.1.0 x86_64 Slackonly
bowtie2 - - -

Download

Type URL
Mirror packages.slackonly.com
Binary Package bowtie2-2.1.0-i586-1_slonly.txz
Source Package -

Install Howto

  1. Download bowtie2-2.1.0-i586-1_slonly.txz
  2. Install bowtie2 txz package:
    # upgradepkg --install-new bowtie2-2.1.0-i586-1_slonly.txz

Files

Path
/install/slack-desc
/usr/
/usr/bin/bowtie2
/usr/bin/bowtie2-align
/usr/bin/bowtie2-build
/usr/bin/bowtie2-inspect
/usr/doc/
/usr/doc/bowtie2-2.1.0/AUTHORS
/usr/doc/bowtie2-2.1.0/LICENSE
/usr/doc/bowtie2-2.1.0/MANUAL
/usr/doc/bowtie2-2.1.0/NEWS
/usr/doc/bowtie2-2.1.0/References
/usr/doc/bowtie2-2.1.0/TUTORIAL
/usr/doc/bowtie2-2.1.0/VERSION
/usr/doc/bowtie2-2.1.0/bowtie2.SlackBuild
/usr/doc/bowtie2-2.1.0/doc/README
/usr/doc/bowtie2-2.1.0/doc/manual.html
/usr/doc/bowtie2-2.1.0/doc/strip_markdown.pl
/usr/doc/bowtie2-2.1.0/doc/style.css
/usr/share/
/usr/share/bowtie2/
/usr/share/bowtie2/example/
/usr/share/bowtie2/example/index/lambda_virus.1.bt2.gz
/usr/share/bowtie2/example/index/lambda_virus.2.bt2.gz
/usr/share/bowtie2/example/index/lambda_virus.3.bt2.gz
/usr/share/bowtie2/example/index/lambda_virus.4.bt2.gz
/usr/share/bowtie2/example/index/lambda_virus.rev.1.bt2.gz
/usr/share/bowtie2/example/index/lambda_virus.rev.2.bt2.gz
/usr/share/bowtie2/example/reads/longreads.fq.gz
/usr/share/bowtie2/example/reads/reads_1.fq.gz
/usr/share/bowtie2/example/reads/reads_2.fq.gz
/usr/share/bowtie2/example/reads/simulate.pl
/usr/share/bowtie2/example/reference/lambda_virus.fa
/usr/share/bowtie2/scripts/convert_quals.pl
/usr/share/bowtie2/scripts/gen_2b_occ_lookup.pl
/usr/share/bowtie2/scripts/gen_occ_lookup.pl
/usr/share/bowtie2/scripts/gen_solqual_lookup.pl
/usr/share/bowtie2/scripts/infer_fraglen.pl
/usr/share/bowtie2/scripts/make_a_thaliana_tair.sh
/usr/share/bowtie2/scripts/make_b_taurus_UMD3.sh
/usr/share/bowtie2/scripts/make_c_elegans.sh
/usr/share/bowtie2/scripts/make_canFam2.sh
/usr/share/bowtie2/scripts/make_d_melanogaster.sh
/usr/share/bowtie2/scripts/make_e_coli.sh
/usr/share/bowtie2/scripts/make_h_sapiens_ncbi36.sh
/usr/share/bowtie2/scripts/make_h_sapiens_ncbi37.sh
/usr/share/bowtie2/scripts/make_hg18.sh
/usr/share/bowtie2/scripts/make_hg19.sh
/usr/share/bowtie2/scripts/make_m_musculus_ncbi37.sh
/usr/share/bowtie2/scripts/make_mm10.sh
/usr/share/bowtie2/scripts/make_mm9.sh
/usr/share/bowtie2/scripts/make_rn4.sh
/usr/share/bowtie2/scripts/make_s_cerevisiae.sh

See Also

Package Description
boxes-1.1.2-i586-1_slonly.txz ASCII Box Drawing
bozohttpd-20170201-i586-1_slonly.txz simple and lightweight HTTP server
bpp-core-git_669fa51-i586-1_slonly.txz Bio++ Core Library
bpp-phyl-git_bf2e0d6-i586-1_slonly.txz Bio++ Phylogenetic Library
bpp-phyl-omics-git_2a61eee-i586-1_slonly.txz Bio++ Phylogenetic Omics Library
bpp-popgen-git_d40aa82-i586-1_slonly.txz Bio++ Population Genetics Library
bpp-seq-git_bc96368-i586-1_slonly.txz Bio++ Sequence library
bpp-seq-omics-git_9e4be7f-i586-1_slonly.txz Bio++ Sequence Omics Library
bppsuite-git_e2d0827-i586-1_slonly.txz Bio++ program suite
bpython-0.17-i586-1_slonly.txz Fancy Interface to the Python Interpreter
brackets-1.9-i386-1_slonly.txz code editor for the web
braincurses-0.5c-i586-1_slonly.txz ncurses mastermind game
brainparty-0.61-i586-1_slonly.txz puzzle game
brewtarget-2.0.2-i586-1_slonly.txz free brewing software
brickout-20020609-i586-1_slonly.txz ball-and-paddle game
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