bowtie-1.0.0-i586-1_slonly.txz


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Description

bowtie - A short read aligner of DNA sequences

Distribution: Slackware 14.2
Repository: Slackonly i486
Package name: bowtie
Package version: 1.0.0
Package release: 1_slonly
Package architecture: i586
Package type: txz
Installed size: 9.33 MB
Download size: 6.81 MB
Official Mirror: packages.slackonly.com
Bowtie is an ultrafast, memory-efficient short read aligner geared toward quickly aligning large sets of short DNA sequences (reads) to large genomes. Home: http://bowtie-bio.sourceforge.net/ References: /usr/doc/bowtie-1.0.0/References

Alternatives

    Download

    Source package: unknown

    Install Howto

    1. Download bowtie-1.0.0-i586-1_slonly.txz
    2. Install bowtie txz package:
      # upgradepkg --install-new bowtie-1.0.0-i586-1_slonly.txz

    Files

    • /install/slack-desc
    • /usr/
    • /usr/bin/bowtie
    • /usr/bin/bowtie-build
    • /usr/bin/bowtie-inspect
    • /usr/doc/
    • /usr/doc/bowtie-1.0.0/AUTHORS
    • /usr/doc/bowtie-1.0.0/LICENSE
    • /usr/doc/bowtie-1.0.0/MANUAL
    • /usr/doc/bowtie-1.0.0/NEWS
    • /usr/doc/bowtie-1.0.0/References
    • /usr/doc/bowtie-1.0.0/TUTORIAL
    • /usr/doc/bowtie-1.0.0/VERSION
    • /usr/doc/bowtie-1.0.0/bowtie.SlackBuild
    • /usr/doc/bowtie-1.0.0/doc/README
    • /usr/doc/bowtie-1.0.0/doc/manual.html
    • /usr/doc/bowtie-1.0.0/doc/strip_markdown.pl
    • /usr/doc/bowtie-1.0.0/doc/style.css
    • /usr/share/
    • /usr/share/bowtie/
    • /usr/share/bowtie/genomes/NC_008253.fna.gz
    • /usr/share/bowtie/indexes/e_coli.1.ebwt.gz
    • /usr/share/bowtie/indexes/e_coli.2.ebwt.gz
    • /usr/share/bowtie/indexes/e_coli.3.ebwt.gz
    • /usr/share/bowtie/indexes/e_coli.4.ebwt.gz
    • /usr/share/bowtie/indexes/e_coli.README
    • /usr/share/bowtie/indexes/e_coli.rev.1.ebwt.gz
    • /usr/share/bowtie/indexes/e_coli.rev.2.ebwt.gz
    • /usr/share/bowtie/reads/e_coli_1000.fa
    • /usr/share/bowtie/reads/e_coli_1000.fq
    • /usr/share/bowtie/reads/e_coli_1000.raw
    • /usr/share/bowtie/reads/e_coli_10000snp.fa
    • /usr/share/bowtie/reads/e_coli_10000snp.fq
    • /usr/share/bowtie/reads/e_coli_1000_1.fa
    • /usr/share/bowtie/reads/e_coli_1000_1.fq
    • /usr/share/bowtie/reads/e_coli_1000_2.fa
    • /usr/share/bowtie/reads/e_coli_1000_2.fq
    • /usr/share/bowtie/scripts/best_verify.pl
    • /usr/share/bowtie/scripts/bs_mapability.pl
    • /usr/share/bowtie/scripts/build_test.sh
    • /usr/share/bowtie/scripts/colorize_fasta.pl
    • /usr/share/bowtie/scripts/colorize_fastq.pl
    • /usr/share/bowtie/scripts/convert_quals.pl
    • /usr/share/bowtie/scripts/fastq_to_tabbed.pl
    • /usr/share/bowtie/scripts/gen_2b_occ_lookup.pl
    • /usr/share/bowtie/scripts/gen_dnamasks2colormask.pl
    • /usr/share/bowtie/scripts/gen_occ_lookup.pl
    • /usr/share/bowtie/scripts/gen_solqual_lookup.pl
    • /usr/share/bowtie/scripts/infer_fraglen.pl
    • /usr/share/bowtie/scripts/make_a_thaliana_tair.sh
    • /usr/share/bowtie/scripts/make_b_taurus_UMD3.sh
    • /usr/share/bowtie/scripts/make_c_elegans.sh
    • /usr/share/bowtie/scripts/make_canFam2.sh
    • /usr/share/bowtie/scripts/make_d_melanogaster.sh
    • /usr/share/bowtie/scripts/make_e_coli.sh
    • /usr/share/bowtie/scripts/make_galGal3.sh
    • /usr/share/bowtie/scripts/make_h_sapiens_ncbi36.sh
    • /usr/share/bowtie/scripts/make_h_sapiens_ncbi37.sh
    • /usr/share/bowtie/scripts/make_hg18.sh
    • /usr/share/bowtie/scripts/make_hg19.sh
    • /usr/share/bowtie/scripts/make_m_musculus_ncbi37.sh
    • /usr/share/bowtie/scripts/make_mm8.sh
    • /usr/share/bowtie/scripts/make_mm9.sh
    • /usr/share/bowtie/scripts/make_rn4.sh
    • /usr/share/bowtie/scripts/make_s_cerevisiae.sh
    • /usr/share/bowtie/scripts/mapability.pl
    • /usr/share/bowtie/scripts/pe_verify.pl
    • /usr/share/bowtie/scripts/random_bowtie_tests.pl
    • /usr/share/bowtie/scripts/random_bowtie_tests.sh
    • /usr/share/bowtie/scripts/random_bowtie_tests_p.sh
    • /usr/share/bowtie/scripts/reconcile_alignments.pl
    • /usr/share/bowtie/scripts/reconcile_alignments_pe.pl
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