bedtools-2.26.0-i586-1_slonly.txz


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Description

bedtools - A powerful toolset for genome arithmetic

Distribution: Slackware 14.2
Repository: Slackonly i486
Package name: bedtools
Package version: 2.26.0
Package release: 1_slonly
Package architecture: i586
Package type: txz
Installed size: 4.46 MB
Download size: 2.85 MB
Official Mirror: packages.slackonly.com
The bedtools utilities are a swiss-army knife of tools for a wide-range of genomics analysis tasks. The most widely-used tools enable genome arithmetic: that is, set theory on the genome. Home: http://bedtools.readthedocs.org/

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    Source package: unknown

    Install Howto

    1. Download bedtools-2.26.0-i586-1_slonly.txz
    2. Install bedtools txz package:
      # upgradepkg --install-new bedtools-2.26.0-i586-1_slonly.txz

    Files

    • /install/slack-desc
    • /usr/
    • /usr/bin/annotateBed
    • /usr/bin/bamToBed
    • /usr/bin/bamToFastq
    • /usr/bin/bed12ToBed6
    • /usr/bin/bedToBam
    • /usr/bin/bedToIgv
    • /usr/bin/bedpeToBam
    • /usr/bin/bedtools
    • /usr/bin/closestBed
    • /usr/bin/clusterBed
    • /usr/bin/complementBed
    • /usr/bin/coverageBed
    • /usr/bin/expandCols
    • /usr/bin/fastaFromBed
    • /usr/bin/flankBed
    • /usr/bin/genomeCoverageBed
    • /usr/bin/getOverlap
    • /usr/bin/groupBy
    • /usr/bin/intersectBed
    • /usr/bin/linksBed
    • /usr/bin/mapBed
    • /usr/bin/maskFastaFromBed
    • /usr/bin/mergeBed
    • /usr/bin/multiBamCov
    • /usr/bin/multiIntersectBed
    • /usr/bin/nucBed
    • /usr/bin/pairToBed
    • /usr/bin/pairToPair
    • /usr/bin/randomBed
    • /usr/bin/shiftBed
    • /usr/bin/shuffleBed
    • /usr/bin/slopBed
    • /usr/bin/sortBed
    • /usr/bin/subtractBed
    • /usr/bin/tagBam
    • /usr/bin/unionBedGraphs
    • /usr/bin/windowBed
    • /usr/bin/windowMaker
    • /usr/doc/
    • /usr/doc/bedtools-2.26.0/LICENSE
    • /usr/doc/bedtools-2.26.0/README.md
    • /usr/doc/bedtools-2.26.0/RELEASE_HISTORY
    • /usr/doc/bedtools-2.26.0/bedtools.SlackBuild
    • /usr/share/
    • /usr/share/bedtools/
    • /usr/share/bedtools/data/aluY.chr1.bed.gz
    • /usr/share/bedtools/data/gerp.chr1.bed.gz
    • /usr/share/bedtools/data/knownGene.hg18.chr21.bed
    • /usr/share/bedtools/data/knownGene.hg18.chr21.short.bed
    • /usr/share/bedtools/data/refseq.chr1.exons.bed.gz
    • /usr/share/bedtools/data/simpleRepeats.chr1.bed.gz
    • /usr/share/bedtools/genomes/human.hg18.genome
    • /usr/share/bedtools/genomes/human.hg19.genome
    • /usr/share/bedtools/genomes/human.hg38.genome
    • /usr/share/bedtools/genomes/mouse.mm10.genome
    • /usr/share/bedtools/genomes/mouse.mm8.genome
    • /usr/share/bedtools/genomes/mouse.mm9.genome
    • /usr/share/bedtools/scripts/makeBashScripts.py
    • /usr/share/bedtools/scripts/vcfsort.sh
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