HMMER-3.1b2-i586-1_slonly.txz


Advertisement

Description

HMMER - Biosequence analysis using profile hidden Markov models

Distribution: Slackware 14.2
Repository: Slackonly i486
Package name: HMMER
Package version: 3.1b2
Package release: 1_slonly
Package architecture: i586
Package type: txz
Installed size: 18.10 MB
Download size: 2.20 MB
Official Mirror: packages.slackonly.com
HMMER is used for searching sequence databases for sequence homologs, and for making sequence alignments. It implements methods using probabilistic models called profile hidden Markov models (profile HMMs). Home: http://hmmer.org/ Publications: http://hmmer.org/publications.html

Alternatives

    Download

    Source package: unknown

    Install Howto

    1. Download HMMER-3.1b2-i586-1_slonly.txz
    2. Install HMMER txz package:
      # upgradepkg --install-new HMMER-3.1b2-i586-1_slonly.txz

    Files

    • /install/slack-desc
    • /usr/
    • /usr/bin/alimask
    • /usr/bin/hmmalign
    • /usr/bin/hmmbuild
    • /usr/bin/hmmc2
    • /usr/bin/hmmconvert
    • /usr/bin/hmmemit
    • /usr/bin/hmmerfm-exactmatch
    • /usr/bin/hmmfetch
    • /usr/bin/hmmlogo
    • /usr/bin/hmmpgmd
    • /usr/bin/hmmpress
    • /usr/bin/hmmscan
    • /usr/bin/hmmsearch
    • /usr/bin/hmmsim
    • /usr/bin/hmmstat
    • /usr/bin/jackhmmer
    • /usr/bin/makehmmerdb
    • /usr/bin/nhmmer
    • /usr/bin/nhmmscan
    • /usr/bin/phmmer
    • /usr/doc/
    • /usr/doc/HMMER-3.1b2/HMMER.SlackBuild
    • /usr/doc/HMMER-3.1b2/INSTALL
    • /usr/doc/HMMER-3.1b2/LICENSE
    • /usr/doc/HMMER-3.1b2/README
    • /usr/doc/HMMER-3.1b2/Userguide.pdf
    • /usr/doc/HMMER-3.1b2/release-notes
    • /usr/include/cachedb.h
    • /usr/include/hmmer.h
    • /usr/include/impl_sse.h
    • /usr/include/p7_config.h
    • /usr/include/p7_gbands.h
    • /usr/include/p7_gmxb.h
    • /usr/include/p7_gmxchk.h
    • /usr/include/p7_hmmcache.h
    • /usr/lib/libhmmer.a
    • /usr/man/
    • /usr/man/man1/alimask.1.gz
    • /usr/man/man1/hmmalign.1.gz
    • /usr/man/man1/hmmbuild.1.gz
    • /usr/man/man1/hmmconvert.1.gz
    • /usr/man/man1/hmmemit.1.gz
    • /usr/man/man1/hmmer.1.gz
    • /usr/man/man1/hmmfetch.1.gz
    • /usr/man/man1/hmmlogo.1.gz
    • /usr/man/man1/hmmpgmd.1.gz
    • /usr/man/man1/hmmpress.1.gz
    • /usr/man/man1/hmmscan.1.gz
    • /usr/man/man1/hmmsearch.1.gz
    • /usr/man/man1/hmmsim.1.gz
    • /usr/man/man1/hmmstat.1.gz
    • /usr/man/man1/jackhmmer.1.gz
    • /usr/man/man1/makehmmerdb.1.gz
    • /usr/man/man1/nhmmer.1.gz
    • /usr/man/man1/nhmmscan.1.gz
    • /usr/man/man1/phmmer.1.gz
    • /usr/share/
    • /usr/share/HMMER/7LESS_DROME
    • /usr/share/HMMER/HBB_HUMAN
    • /usr/share/HMMER/MADE1.hmm
    • /usr/share/HMMER/MADE1.hmm.h3f
    • /usr/share/HMMER/MADE1.hmm.h3i
    • /usr/share/HMMER/MADE1.hmm.h3m
    • /usr/share/HMMER/MADE1.hmm.h3p
    • /usr/share/HMMER/MADE1.out
    • /usr/share/HMMER/MADE1.sto
    • /usr/share/HMMER/Pkinase.hmm
    • /usr/share/HMMER/Pkinase.sto
    • /usr/share/HMMER/dna_target.fa
    • /usr/share/HMMER/fn3.hmm
    • /usr/share/HMMER/fn3.out
    • /usr/share/HMMER/fn3.sto
    • /usr/share/HMMER/globins4.hmm
    • /usr/share/HMMER/globins4.out
    • /usr/share/HMMER/globins4.sto
    • /usr/share/HMMER/globins45.fa
    • /usr/share/HMMER/minifam
    • /usr/share/HMMER/minifam.h3f
    • /usr/share/HMMER/minifam.h3i
    • /usr/share/HMMER/minifam.h3m
    • /usr/share/HMMER/minifam.h3p
    Advertisement
    Advertisement