tophat-2.1.0-i486-1_slack.txz


Advertisement

Description

tophat - Splice junction mapper for RNA-Seq reads

Property Value
Distribution Slackware 14.1
Repository Slackonly i486
Package filename tophat-2.1.0-i486-1_slack.txz
Package name tophat
Package version 2.1.0
Package release 1_slack
Package architecture i486
Package type txz
Homepage -
License -
Maintainer -
Download size 704.00 KB
Installed size 3.83 MB
TopHat is a fast splice junction mapper for RNA-Seq reads. It
aligns RNA-Seq reads to mammalian-sized genomes using the ultra
high-throughput short read aligner Bowtie, and then analyzes the
mapping results to identify splice junctions between exons.
Home: http://tophat.cbcb.umd.edu/
References: /usr/doc/tophat-2.1.0/References

Alternatives

Package Version Architecture Repository
tophat-2.1.0-x86_64-1_slack.txz 2.1.0 x86_64 Slackonly
tophat - - -

Download

Type URL
Mirror packages.slackonly.com
Binary Package tophat-2.1.0-i486-1_slack.txz
Source Package -

Install Howto

  1. Download tophat-2.1.0-i486-1_slack.txz
  2. Install tophat txz package:
    # upgradepkg --install-new tophat-2.1.0-i486-1_slack.txz

Files

Path
/install/slack-desc
/usr/
/usr/bin/bam2fastx
/usr/bin/bam_merge
/usr/bin/bed_to_juncs
/usr/bin/contig_to_chr_coords
/usr/bin/fix_map_ordering
/usr/bin/gtf_juncs
/usr/bin/gtf_to_fasta
/usr/bin/juncs_db
/usr/bin/long_spanning_reads
/usr/bin/map2gtf
/usr/bin/prep_reads
/usr/bin/sam_juncs
/usr/bin/samtools_0.1.18
/usr/bin/segment_juncs
/usr/bin/sra_to_solid
/usr/bin/tophat
/usr/bin/tophat-fusion-post
/usr/bin/tophat2
/usr/bin/tophat_reports
/usr/bin/intervaltree/__init__.py
/usr/bin/intervaltree/interval.py
/usr/bin/intervaltree/intervaltree.py
/usr/bin/intervaltree/node.py
/usr/bin/sortedcontainers/__init__.py
/usr/bin/sortedcontainers/sorteddict.py
/usr/bin/sortedcontainers/sortedlist.py
/usr/bin/sortedcontainers/sortedlistwithkey.py
/usr/bin/sortedcontainers/sortedset.py
/usr/doc/
/usr/doc/tophat-2.1.0/AUTHORS
/usr/doc/tophat-2.1.0/INSTALL
/usr/doc/tophat-2.1.0/LICENSE
/usr/doc/tophat-2.1.0/NEWS
/usr/doc/tophat-2.1.0/README
/usr/doc/tophat-2.1.0/References
/usr/doc/tophat-2.1.0/THANKS
/usr/doc/tophat-2.1.0/tophat.SlackBuild

See Also

Package Description
tora-2.1.3-i486-1_slack.txz database management
torcs-1.3.6-i486-1_slack.txz highly portable multi platform car racing simulation
tornado-4.2.1-i486-1_slack.txz web framework and asynchronous networking library
tornado_systemd-1.0.1-i486-2_slack.txz socket activation with tornado
toro-0.8-i486-2_slack.txz Synchronization primitives for Tornado coroutines
torrentinfo-1.0.2-noarch-1_slack.txz command-line tool that parses .torrent files
torsocks-1.1-i486-2_slack.txz socks friendly usage with tor
totem-2.32.0-i486-1_slack.txz GNOME Movie Player
totem-pl-parser-3.4.5-i486-1_slack.txz totem playlist parser
tovid-0.35.2-i486-2_slack.txz a collection of GPL video disc authoring tools
tp_smapi-0.41_3.10.17_smp-i486-1_slack.txz SMAPI BIOS access for ThinkPad Laptops
tpc-0.44rc2-i486-1_slack.txz utility to control and tweak modern AMD processors
trac-1.0.4-i486-6_slack.txz enhanced wiki and issue tracking system
trachet-1.0.9-i486-1_slack.txz Step-by-step/realtime terminal debugger
trackballs-1.1.4-i486-2_slack.txz marble game
Advertisement
Advertisement